Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01195 ATGGCACTTTGTCATAAACTAGGAAGCTATTTGAGACAGACCATTTCTCAAAATGGACCTGCACCAATGACGTCTATGCTTAATTCCATTCGATACATGTCATCTTCAAGGCTTTTTATTGGAGGTCTTTCGTTTGGAACTGATGACCAATCTCTTAAGGATGCGTTTTCATCTTTTGGTGATGTTGTTGATGCAAAGGTGATTACTGATAGGGAGTCGGGCAGGTCTCGGGGATTTGGGTTTGTGAACTTTTCAAATGATGAATCTGCTAGCTCTGCCATGTCTGCCATGGATGGCCAGGAGCTAAATGGGCGGAGTATTCGAGTGAGTTTTGCAACTGATAGACCGGCTGGTCCTCGTGGTGGTGGTGGTGGTTTTCGAGGTGATGGAGGCTATGGGAGTATGAATTCTGGCTTTTGA 420 45.0 MALCHKLGSYLRQTISQNGPAPMTSMLNSIRYMSSSRLFIGGLSFGTDDQSLKDAFSSFGDVVDAKVITDRESGRSRGFGFVNFSNDESASSAMSAMDGQELNGRSIRVSFATDRPAGPRGGGGGFRGDGGYGSMNSGF 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54043935 54045046 + Bma016037.1 Bma02g01195 78445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01195 139 Gene3D - 27 139 IPR012677 -
Bma02g01195 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Bma02g01195 139 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bma02g01195 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 133 - -
Bma02g01195 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bma02g01195 139 SUPERFAMILY RNA-binding domain, RBD 25 135 IPR035979 GO:0003676
Bma02g01195 139 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01195 - - - jre:109008441 180.259
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01195 Bma06g01271 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01195 Bma-Chr2:54043935 Bma03g00850 Bma-Chr3:8185672 1.38E-41 dispersed
Bma14g00366 Bma-Chr14:4421664 Bma02g01195 Bma-Chr2:54043935 1.87E-11 dispersed
Bma02g01195 Bma-Chr2:54043935 Bma06g01271 Bma-Chr6:49806530 3.19E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01195 Bma_Chr02 FPKM 15.616857 15.896447 16.300426 14.319916 20.608963 19.691978 21.201164 26.798904 27.177546 30.52858