Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01198 ATGGATGGAGGCGGGAGCGGTGGCCCTGCGCCGTTTCTGATGAAGACGTATGACATGGTGGATGACTCAGCGACGGATGAGATTGTGTCGTGGAGCTCGGCGAAGAATAGCTTCGTCGTGTGGAACCCACCGGAGTTCGCTCGGCTTCTTCTTCCAACTTATTTCAAACACAACAACTTCTCCAGCTTTATTCGGCAGCTCAACACCTATGGTTTTCGAAAGATTGATCCTGAGAAGTGGGAATTCGCCAATGAAGACTTTGTGAAAGATCAGAAACATCTCCTGAAAAATATCCATAGAAGAAAACCTATTCATAGCCACAGTCTTTCTCAAGGTTCTTTAGTGGATCCAGAAAGAGCTGCTTTTGAGGAAGAAATAGAGAGGCTTTCACGTGAAAAAGCTATACTTGAGGCAAATTTACTCAAATTAAAACACCATCAGGCTGAGAAGCTTCAGTTAGAGAACATAGCCAAGAGAGTTGAAGGTATGGAAAAAAGGCAGGAAAATTTGCTCATCTTTTTGAAAAAGGCTGTTCAGAATCCTTCCTTTGTTGAACAGTTAGCTCGGAAAGTTGAGTCCATGGACTTCTCATCATACAATAAGAAAAGACGGCTGCCTGAAGTTGATCACATACAGCCAGTCATAAAAAATAACTTTATGGACAATTACAGTAGTTCCCGATCGGAGTTGGGGAATATGTTCCAGCAAGACTTCTTGAATAAGCTGAGATTAGAATTATCACCTGCTGTTTCAGATGTTAATTTGGTTTCATGTAGCACACAGAGTTCAAATGATGAAGGTGGAAGTCCTCAAAGACACATGTCTGAAGAAGAATATAGAAGCGCACCAGCTAGAGCGGAAAGTCTTTATCTCACCACTGAGACATTAGATCTTTCAGATACTGGGACATCATTTACTTTGAACATGGATTTATCTTCACAACGAAATGCATCAAGGAAAGGAAACCCAAAACTTTACACCTTGCAGGAAAGTGGAACTTCGATTGAAGATGGTGACAGTAATATTTCGTGTCATTTGAATCTTACTTTGGCATCTTCTCCCTTGCAATTCAATATCAGTTCTATGCCAGCTAGGATACCACCCCAACTCAGTTATGAAATTGGTAAATCCCCTGAATCTGTTCTCAACTCCAGTAGTAAAGAATGTGCTAATTTTTCCTGCAAAAACGGTAACATTGTCGATGAGGAAAAGACAAATTCTTCTTCTCAAGATCCCCATCGTGACAGCCCAGAGACTCCCCCTGCTCCAGTTAGAGTAAATGATGTTTTCTGGGAACAGTTTCTAACCGAAAGACCAGGCTGTGCAGAAAATGAAGAGGCGAGTTCTAATAACAAGGCAAACCCATATACTGAGCAGGACAGTGGAAGGTCTGGCCATGGAATATACAGAAACACCAAGAACATTGACGAATTATCTCTATGA 1443 41.72 MDGGGSGGPAPFLMKTYDMVDDSATDEIVSWSSAKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEKWEFANEDFVKDQKHLLKNIHRRKPIHSHSLSQGSLVDPERAAFEEEIERLSREKAILEANLLKLKHHQAEKLQLENIAKRVEGMEKRQENLLIFLKKAVQNPSFVEQLARKVESMDFSSYNKKRRLPEVDHIQPVIKNNFMDNYSSSRSELGNMFQQDFLNKLRLELSPAVSDVNLVSCSTQSSNDEGGSPQRHMSEEEYRSAPARAESLYLTTETLDLSDTGTSFTLNMDLSSQRNASRKGNPKLYTLQESGTSIEDGDSNISCHLNLTLASSPLQFNISSMPARIPPQLSYEIGKSPESVLNSSSKECANFSCKNGNIVDEEKTNSSSQDPHRDSPETPPAPVRVNDVFWEQFLTERPGCAENEEASSNNKANPYTEQDSGRSGHGIYRNTKNIDELSL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54072709 54074723 - Bma016039.1 Bma02g01198 78448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01198 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 476 IPR027725 -
Bma02g01198 480 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma02g01198 480 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma02g01198 480 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma02g01198 480 SUPERFAMILY Winged helix DNA-binding domain 8 101 IPR036390 -
Bma02g01198 480 MobiDBLite consensus disorder prediction 440 480 - -
Bma02g01198 480 MobiDBLite consensus disorder prediction 443 480 - -
Bma02g01198 480 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 4 476 - -
Bma02g01198 480 Coils Coil 119 166 - -
Bma02g01198 480 MobiDBLite consensus disorder prediction 400 425 - -
Bma02g01198 480 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma02g01198 480 MobiDBLite consensus disorder prediction 258 278 - -
Bma02g01198 480 Gene3D - 7 102 IPR036388 -
Bma02g01198 480 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma02g01198 480 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01198 K09419 HSFF; heat shock transcription factor, other eukaryote - pvy:116110051 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01469 Bma-Chr1:27538842 Bma02g01198 Bma-Chr2:54072709 1.13E-64 dispersed
Bma02g01198 Bma-Chr2:54072709 Bma12g00234 Bma-Chr12:3039218 5.42E-67 dispersed
Bma15g00023 Bma-Chr15:271501 Bma02g01198 Bma-Chr2:54072709 1.03E-50 dispersed
Bma02g01198 Bma-Chr2:54072709 Bma05g00705 Bma-Chr5:41049002 1.40E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g916 . . . . . Bpe14g00850 . . . . Cma06g01196 Cma14g01914 . Car14g01712 Sed12g0352 Cpe08g00417 Cpe03g01613 Bhi01g00185 Tan10g0484 Cmetu06g1519 . . . Lcy11g1801 . . . . . . . . . . . Lsi05g01869 . . Cme06g00359 . . . Bda13g00480 . . Bma02g01198 . . Cmo06g01233 Cmo14g01968 . . . . . . . . . . . . . Cla05g00322 Cam05g0353 Cec05g0355 Cco05g0358 . Cmu05g0334 Cre05g0397 . Csa03g01069 Chy06g00340 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56918 PF00447 HSF_DNA-bind 1.60E-31 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01198 Bma_Chr02 FPKM 29.654398 30.497389 28.461176 28.290703 27.784079 25.272558 29.573809 33.142509 29.126844 30.577459