Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01204 ATGCTTTCTGGGTTTTTCCAGGAAAGTTCCAGAATGTATTCTGGTCTCCACTCTCTACCGATTGATGCCAAGTTTCAGGGATCTTTGGACGGAACCAACTTGCCCGGCGATGCTTGTTTAGTTCTTACTTCCGATCCGAAGCCTCGCCTCCGGTGGACAGCGGAGCTACACGAGAGATTCGTTGATGCCGTAACTCAGCTTGGTGGCCCTGAAAAAGCAACACCTAAGACTATAATGAGAACAATGGGAGTAAAAGGCTTAACCCTCTATCACTTGAAATCGCACCTCCAGAAATACCGGTTGGGGAAGCAATCCAGCAAGGAATTGGCCGAGAACATGAAGGATGGTATCGACTTTTGGCTCCTCTTTTATTCTCAGGTCTCTTCACATATTACTGTTTTTCTTCGTTTGAACAGTGGCTATCAGGTTACTGAAGCTTTGCGGGTTCAAATGGAAGTCCAGAGAAGACTGCATGAGCAGCTGGAGGTCCAGCGTCGGCTTCAACTTCGCATCGAAGCACAAGGAAAATACCTGCAATCAATTCTCGAGAAAGCGTGTCAAGCCTTAAACGATCAAACTGCTGCACAGGCCGCGCTTGAGGCTGCGAGAGAAGAGCTGTCCGAGCTAGAAATTAAGGTTTCAACCAATTATCGAGGAATGGGCTCTCGGGACACACTCAAAATGCCACCTTCCTTATCGGAACTCTCGGCAGCTCTTGAAAGTCGAAGTAGTGTTCCCAATATTCCTTCTCGTGTGGGAGATTGCTCTGTCGAAAGTTGCTTGACATCGGCAGGAAGCCCTGTTTCTCCCATGCGAAAAGGCTCGGCCACTGTCGTGATGGAGAAGAGACCGAGGTCCTTGTTCGGAAACGTAGACTCGATGTCTGTTGACCCAAACACGCGACAAGAAATCGAATGGATGATGACAAACATCGGATGA 939 48.46 MLSGFFQESSRMYSGLHSLPIDAKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSSKELAENMKDGIDFWLLFYSQVSSHITVFLRLNSGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACQALNDQTAAQAALEAAREELSELEIKVSTNYRGMGSRDTLKMPPSLSELSAALESRSSVPNIPSRVGDCSVESCLTSAGSPVSPMRKGSATVVMEKRPRSLFGNVDSMSVDPNTRQEIEWMMTNIG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54120400 54122531 - Bma016045.2 Bma02g01204 78454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01204 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 309 IPR044848 GO:0003700
Bma02g01204 312 Coils Coil 189 212 - -
Bma02g01204 312 Pfam Myb-like DNA-binding domain 50 100 IPR001005 -
Bma02g01204 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Bma02g01204 312 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Bma02g01204 312 Gene3D - 46 105 - -
Bma02g01204 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Bma02g01204 312 PANTHER PROTEIN PHR1-LIKE 2 12 309 - -
Bma02g01204 312 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01204 - - - rcu:8280672 398.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01204 Bma06g01283 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01204 Bma-Chr2:54120400 Bma11g00043 Bma-Chr11:576963 9.23E-69 dispersed
Bma14g01215 Bma-Chr14:18590862 Bma02g01204 Bma-Chr2:54120400 2.74E-45 dispersed
Bma02g01204 Bma-Chr2:54120400 Bma06g01283 Bma-Chr6:49912101 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56919 PF00249 Myb_DNA-binding 2.60E-07 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01204 Bma_Chr02 FPKM 24.41573 26.55036 30.011948 26.896538 44.913452 46.388294 42.674503 25.915203 24.963793 25.418726