Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01206 ATGGATAAAGTAAGCTTCGCAGAGGTGATGCAGTTCGCAGATTTTGGACCAAAGTTAGGTTTAACACAAAACAAGATAGTTGAAGAGTATCAATCAGGAATGGATCCGATATACTTCCTCAAATTCCCCGTCTTAAACGATAAAGTAGACGATCAATCTCTTATGGCTTCAAGAGAGGAAGAAACCGACGAGAGGTTTCGAGAGATGGAAGGGAAGAACAAGAGGAAAAGGCCGAGAACGATCAAAACCAGTGAAGAAGTTGAAAGCCAGAGAATGACGCATATTGCAGTGGAGAGAAATAGAAGAAAGCAAATGAATGAACATCTTCGAGTTTTGAGGTCTCTCATGCCAGGCTCCTACGTTCAAAGGGGAGACCAAGCTTCCATAATCGGAGGAGCAATTGAGTTCGTCAGAGAATTGGAGCAACTTCTTCAATGCTTAGAGTCGCAGAAAAGGAGGAGAATCATGGGAGAAGCTCCGAGACAAATACAGGTGGGAATACAGCAAAATCAACCTCCATTTTTTCCTCCGCTGCCTCTTCCAAACGAACAGCTGAAGATCATGGACTTCGAGACCGGCCTCCGGGAAGAAACCGCCGAGAACAAGTCTGGATTAGCTGACGTGGAAGTGAAGCTTTTAGGGTTTGATGCGATGATCAAAATCCTATCGAGAAGAAGACCAGGCCAGCTCATTAAGACCATTGCTGCGCTCGAAGATTTGCAGCTAAATATTCTTCACACCAACATCACAACCATCGAACAAACAGTTCTTTATTCATTCAACGTCAAGGTTGCAGGTGAATCGAGATTCTCTGCTGAAGACATCGCTACCTCAGTTCAACAGATTTTTAGTTTTATTAATGCAAACAATGCTTGA 876 43.49 MDKVSFAEVMQFADFGPKLGLTQNKIVEEYQSGMDPIYFLKFPVLNDKVDDQSLMASREEETDERFREMEGKNKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRIMGEAPRQIQVGIQQNQPPFFPPLPLPNEQLKIMDFETGLREETAENKSGLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKVAGESRFSAEDIATSVQQIFSFINANNA 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54127610 54128843 - Bma016047.1 Bma02g01206 78456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01206 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Bma02g01206 291 PANTHER TRANSCRIPTION FACTOR FAMA 2 62 - -
Bma02g01206 291 MobiDBLite consensus disorder prediction 56 89 - -
Bma02g01206 291 PANTHER TRANSCRIPTION FACTOR FAMA 67 290 IPR044283 GO:0003700|GO:0010052
Bma02g01206 291 PANTHER TRANSCRIPTION FACTOR FAMA 2 62 IPR044283 GO:0003700|GO:0010052
Bma02g01206 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 160 IPR036638 GO:0046983
Bma02g01206 291 Gene3D - 72 155 IPR036638 GO:0046983
Bma02g01206 291 PANTHER TRANSCRIPTION FACTOR FAMA 67 290 - -
Bma02g01206 291 SUPERFAMILY ACT-like 218 281 IPR045865 -
Bma02g01206 291 ProSiteProfiles ACT domain profile. 218 291 IPR002912 -
Bma02g01206 291 CDD ACT_UUR-ACR-like 218 282 - -
Bma02g01206 291 CDD bHLH_AtFAMA_like 92 165 - -
Bma02g01206 291 SMART finulus 95 146 IPR011598 GO:0046983
Bma02g01206 291 Pfam Helix-loop-helix DNA-binding domain 90 141 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01206 Bma06g01356 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01206 Bma-Chr2:54127610 Bma06g01356 Bma-Chr6:50447526 2.51E-57 dispersed
Bma02g01206 Bma-Chr2:54127610 Bma08g00377 Bma-Chr8:8479415 5.11E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56920 PF00010 HLH 5.20E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01206 - - pvy:116125979 423.705