Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01213 ATGCTAGTCATAAAAGGTTGTGAGAATTTATCCATGGCTGCAAGAGAACTTAGTGTCAGTTTTGGCTACCAATTCCCTGCTACTAGCCCCAAAGATTCAACTTTTGAACTAAGTGAATTTGATGCAAATGGCGATGAACCTCAAAATTCAAAATTGAACACTGGGAATAGCTCTTTTTCTTGTCTATCTGGTGCTGCTCTTAGCGCTAATGCCACTCTGGCTAACACAAGAATCTGTAATGGTCTTATTGGAGATGAAATTTTACCTATCCTTGATTCTCCTACTTCATTTAGAAGAATTCCATCTTCGCCTAGTCTTAACCGACTGGATCTTTTATCGGCTCCACCCTTAAATGTCAAGCCTCCTACTGACCAAATTGCATCAACTGAAGGCTTGTTAACTGATAGTGAAATGAGTTTGTGGAAACCCACTAATGTTCTAACTAGAGAAGAATCCTCAAGCTTTCTAAATGCCATGGATGTTCAAATGGCCGGAGGGGCTGCAGGAGAAGATAGAGTTCAAGCTGTATGTTCCGAAGAAAATGGGTGGCTCTTCTGTGGAATATATGATGGTTTTAATGGGCGGGATGCGGCTGACTTTCTTGCGGGAACTCTATATGAAAAGATTGATTTCTTTCTTTGTAAATTAGAAGAGAATAAAGTTAAGATGTCTCATCTGGTAGAAAGAATCGATTCAGATATCATTCTATCTCATGATTGTGACAGTGGCAAAACCAACTCTTCTCATTCAAATGATGAAGAAACGATTTACAAACACTTCCGCTCAGGCGTAATTGATTGCTTAAATCATGCTCTTGATCAAGCGGAGCGAGATTTCATGTACATGGTGGAACAGGAAATGGAACTTCGCCCTGAACTCGTGTCCGTCGGGTCTTGTGTTTTGGTACTGCTTCTTTATGGAAATGATTTCTACATTCTAAATTTAGGTGATAGCAGAGCAGTATTGGCTACTAATGACCCTGAAAAGTATGGTTTAGTGAATGCCATCCAACTGACAGAAGGTCATACTGTTGACAATCATCTGGAGTGTTGTAAACTTTTGACCGATCACCCGGATGAGCCGTCTCCTATTGTTAATGGAAGAGTTAAAGGGAAGCTAAGGTTGACCCGAGCGTTCGGAGTTGGCTACCTGAAAAAGACTGAAATGAATGACATGCTGATGGGCATTTTACAAGTTCAAAATTTATGCAATCCTCCGTATGTTTACACACATCCCTTCACAATGATTCATAGAGCGTCGGATAGAGATCAATTCGTCGTCTTAGGAAGTGATGGGTTGTTCGATTTCCTCAGCAATGACGAGGTAGTACAGCTCGTCCACACATTCATCCATCAGAATCCTTTAGGAGATCCTGCGAAGTATCTCGTCGAACAGCTCATCGAGAGAGCAGCCAATAATGCAGGTTTTAGCACTGAAGAATTGATGAGGATTCCGGCAGGAAGGAGAAGGAAGTACCACGACGATGTTACTGTAATTGTCATCGTCCTCGGAAATAAAAACCGGGCTTCCACTGCGTCGACATCTCTATAA 1551 41.59 MLVIKGCENLSMAARELSVSFGYQFPATSPKDSTFELSEFDANGDEPQNSKLNTGNSSFSCLSGAALSANATLANTRICNGLIGDEILPILDSPTSFRRIPSSPSLNRLDLLSAPPLNVKPPTDQIASTEGLLTDSEMSLWKPTNVLTREESSSFLNAMDVQMAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGTLYEKIDFFLCKLEENKVKMSHLVERIDSDIILSHDCDSGKTNSSHSNDEETIYKHFRSGVIDCLNHALDQAERDFMYMVEQEMELRPELVSVGSCVLVLLLYGNDFYILNLGDSRAVLATNDPEKYGLVNAIQLTEGHTVDNHLECCKLLTDHPDEPSPIVNGRVKGKLRLTRAFGVGYLKKTEMNDMLMGILQVQNLCNPPYVYTHPFTMIHRASDRDQFVVLGSDGLFDFLSNDEVVQLVHTFIHQNPLGDPAKYLVEQLIERAANNAGFSTEELMRIPAGRRRKYHDDVTVIVIVLGNKNRASTASTSL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54178395 54180731 + Bma016054.1 Bma02g01213 78463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01213 516 PANTHER PROTEIN PHOSPHATASE 2C 6 515 IPR015655 GO:0004722|GO:0006470
Bma02g01213 516 CDD PP2Cc 168 503 IPR001932 -
Bma02g01213 516 Pfam Protein phosphatase 2C 264 469 IPR001932 -
Bma02g01213 516 ProSiteProfiles PPM-type phosphatase domain profile. 155 503 IPR001932 -
Bma02g01213 516 Gene3D - 134 512 IPR036457 -
Bma02g01213 516 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 6 515 - -
Bma02g01213 516 SUPERFAMILY PP2C-like 168 505 IPR036457 -
Bma02g01213 516 SMART PP2C_4 146 501 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00896 Bma-Chr2:47752102 Bma02g01213 Bma-Chr2:54178395 4.18E-66 dispersed
Bma02g01213 Bma-Chr2:54178395 Bma04g00665 Bma-Chr4:6405083 7.79E-70 dispersed
Bma02g01213 Bma-Chr2:54178395 Bma06g01503 Bma-Chr6:51508273 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01213 - - vri:117912089 633.254