Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01245 ATGGGAAGAGGGAGAGTGGAGCTGAAGAGGATTGAGAACAAAATCAACAGGCAAGTGACCTTCGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAGTGCAACTACGGAGCCCCGGAGCCAAGTGTTTCCACTAGAGAAGCCATGATTCAATCAATGCAGGAGTTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGATGCTCTACTAAGATCCCAAAGGAACCTTTTGGGTGAAGACCTTGGCCCCCTGACTAGTAAAGATCTTGAGTCGCTTGAAAGGCAACTGGATTCATCACTCAAACTGATCAGATCGACAAGGACTCAATACATGCTGGATCAACTCAATGATCTTCAACGCAAGGAACACTTGCTGTGCGAAGCAAACAAAACCCTGAAACAAAGACTGATGGAAGGGTATCAAATAAGTTCACTACAGCTAATTCCAAATGAAGAGGATGTTGTGTATGATCGTCAACATGCTCAACCTCAGCCAGATGGATTCTTTCATCCCTTAGACTGTGAACCAACTTTGCAAATTGGATATCCGTCTGATCCGATAACAGCAGTCAATGGCGCAGGCCCAAGCCTGAGCAATTACATGCCAGCGTGGTTACCATGA 747 44.85 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMIQSMQELSSQQEYLKLKARYDALLRSQRNLLGEDLGPLTSKDLESLERQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLCEANKTLKQRLMEGYQISSLQLIPNEEDVVYDRQHAQPQPDGFFHPLDCEPTLQIGYPSDPITAVNGAGPSLSNYMPAWLP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54543470 54547225 + Bma016086.1 Bma02g01245 78495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01245 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 ProSiteProfiles K-box domain profile. 94 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g01245 248 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 233 - -
Bma02g01245 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Bma02g01245 248 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bma02g01245 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma02g01245 248 Coils Coil 131 151 - -
Bma02g01245 248 Pfam K-box region 92 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g01245 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma02g01245 248 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bma02g01245 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01093 Bma-Chr1:11526000 Bma02g01245 Bma-Chr2:54543470 2.07E-103 dispersed
Bma02g00452 Bma-Chr2:6954226 Bma02g01245 Bma-Chr2:54543470 2.29E-105 dispersed
Bma02g01245 Bma-Chr2:54543470 Bma04g00847 Bma-Chr4:10666803 1.15E-131 dispersed
Bma01g01473 Bma-Chr1:27996969 Bma02g01245 Bma-Chr2:54543470 2.55E-42 transposed
Bma13g00003 Bma-Chr13:93450 Bma02g01245 Bma-Chr2:54543470 7.13E-40 transposed
Bma13g00123 Bma-Chr13:1274240 Bma02g01245 Bma-Chr2:54543470 1.39E-40 transposed
Bma02g01245 Bma-Chr2:54543470 Bma06g01341 Bma-Chr6:50356222 3.25E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56925 PF01486 K-box 4.70E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01245 - - tcc:18608957 413.69