Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g01245 | ATGGGAAGAGGGAGAGTGGAGCTGAAGAGGATTGAGAACAAAATCAACAGGCAAGTGACCTTCGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCATATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAGTGCAACTACGGAGCCCCGGAGCCAAGTGTTTCCACTAGAGAAGCCATGATTCAATCAATGCAGGAGTTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGATGCTCTACTAAGATCCCAAAGGAACCTTTTGGGTGAAGACCTTGGCCCCCTGACTAGTAAAGATCTTGAGTCGCTTGAAAGGCAACTGGATTCATCACTCAAACTGATCAGATCGACAAGGACTCAATACATGCTGGATCAACTCAATGATCTTCAACGCAAGGAACACTTGCTGTGCGAAGCAAACAAAACCCTGAAACAAAGACTGATGGAAGGGTATCAAATAAGTTCACTACAGCTAATTCCAAATGAAGAGGATGTTGTGTATGATCGTCAACATGCTCAACCTCAGCCAGATGGATTCTTTCATCCCTTAGACTGTGAACCAACTTTGCAAATTGGATATCCGTCTGATCCGATAACAGCAGTCAATGGCGCAGGCCCAAGCCTGAGCAATTACATGCCAGCGTGGTTACCATGA | 747 | 44.85 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMIQSMQELSSQQEYLKLKARYDALLRSQRNLLGEDLGPLTSKDLESLERQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLCEANKTLKQRLMEGYQISSLQLIPNEEDVVYDRQHAQPQPDGFFHPLDCEPTLQIGYPSDPITAVNGAGPSLSNYMPAWLP | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54543470 | 54547225 | + | Bma016086.1 | Bma02g01245 | 78495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g01245 | 248 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | ProSiteProfiles | K-box domain profile. | 94 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g01245 | 248 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 233 | - | - | |
Bma02g01245 | 248 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 233 | - | - | |
Bma02g01245 | 248 | Gene3D | - | 13 | 79 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Bma02g01245 | 248 | Coils | Coil | 131 | 151 | - | - | |
Bma02g01245 | 248 | Pfam | K-box region | 92 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g01245 | 248 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g01245 | 248 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01093 | Bma-Chr1:11526000 | Bma02g01245 | Bma-Chr2:54543470 | 2.07E-103 | dispersed | |
Bma02g00452 | Bma-Chr2:6954226 | Bma02g01245 | Bma-Chr2:54543470 | 2.29E-105 | dispersed | |
Bma02g01245 | Bma-Chr2:54543470 | Bma04g00847 | Bma-Chr4:10666803 | 1.15E-131 | dispersed | |
Bma01g01473 | Bma-Chr1:27996969 | Bma02g01245 | Bma-Chr2:54543470 | 2.55E-42 | transposed | |
Bma13g00003 | Bma-Chr13:93450 | Bma02g01245 | Bma-Chr2:54543470 | 7.13E-40 | transposed | |
Bma13g00123 | Bma-Chr13:1274240 | Bma02g01245 | Bma-Chr2:54543470 | 1.39E-40 | transposed | |
Bma02g01245 | Bma-Chr2:54543470 | Bma06g01341 | Bma-Chr6:50356222 | 3.25E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56925 | PF01486 | K-box | 4.70E-24 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g01245 | - | - | tcc:18608957 | 413.69 |