Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g01259 | ATGAGTATATTAGTAAACGGAGAATCTCAAGTTCCACCGGGGTTTCGATTTCATCCCACAGAAGAAGAACTGCTGCAATACTATTTGAAGAAGAAGGTTTCGAACCAGAAGATTGATCTGGACGTGATTCGCGACGTCGATCTGAACAAGCTGGAGCCATGGGATATACAAGAGGAGTGCAAAATTGGAACGACCCCACAAAATGATTGGTATTTTTTCAGCCATAAAGATAAGAAGTATCCGACGGGAACGAGGACGAACAGAGCCACCATGGCTGGATTTTGGAAAGCTACTGGGCGAGATAAGGTGATTTACAGCTTCTGCAGAAGAATCGGAATGAGAAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCTCATGGCCTTAAATCAGATTGGATCATGCATGAATATCGACTTGATGATAATTCCTCCGAATCAAAGGTACGCAAAACCCTGACCTCCATTTTTGTTTCCATTGTTGTTGGAGAAACAGCTCAGGAAGAAGGGTGGGTGGTTTGCAGAATATTCAAGAAGGTTATCTCTCGTGCAGGAAATTTTTCTGTTTTCGTCAAGATTTCTTACTCCTTGTTCTGGATCTTTGTGCAGAAGAGGGAGAAGCGGAGGTGGAGTTTCAGAAGACAGCAGTCCAATCTACAAGAAATCAAGGTGACCCAAGAGCAGAATCCATTAAAGCCAGCATCTGAAGAGCAGAAGCGCGGCGTCACCGCCGTGGTTCGGCTGAACAAGCCCTGTCATGGCGCTAGAGAGCACTACTACGCCATTTTGATACAAACTTCCTTTAGAGGGTACCTGGCCAGGAGAGCTCTGCGAGCGCTGAAAGGGCTGGTGAAACTGCAGGCGCTGGTGAGGGGTCACAATGTGAGAAAGCAAGCGAAAATGACCCTTAAATGCATGCAAGCTCTCGTTAGAGTCCAAGCTAGAGTGATAGATCAGCGAATCAAACTCACCCACGAAACCTCCAATGTCAAATCTTCCATCTCCAACATAAGCAGTGCCATAGAATCTCGCTACCTTCGAGACATTTCAGACAGAAAATCCATCTCTCAGTCAAGAGAGGGAAGTAGAAGTACAATACCTGATGATTGGGATGAACGTTCTCACACAATCGAAGAAGTTAAAGCAATGTTGCAACAGAGGAGAGATCAAATCGCCATTAACCGTGATCGATCCTTGTCGCGAGCTTTTTCTCACCAGATTATGAGAGATTCGAGGAATCCATCAATGGGAAGCGAATGTGAGCTAGACGACAGACCAAAGTGGCAAGATCAATTAATGAGAAGGAAGCCATGGGAGAGCAGGGGAAGATCTTCAACTGACCAGAGAGCTGATTCCATCAAAACAGTCGAAATCGACACTTCTCTTCCGTACACATACTTGGCGCCTAATTTCCAAAGAGCACCACAAAATCAACACAATCTTCAACAAAGATCTAATCCGCACTCTATTTCTTCGCCAGTCCACCACAGATCCTACAAAACCTCACCACCCCACAACAATTCCTCTTTCACTCCATCTCCGTCCAAAACCAGACCTCTACTCGTTCGATCCGCCAGCCCTCGCTGCATCAGAGAAGAAAAACCCTTCCCAACCTCCCAAACACCAAGCCTCAAGTCCAATTATTACTACAGCATGCAGAATCAAAGCAGAGGAGGAGGAGGAAGTAGCACTGCTGTAAACAACTTCGTAGCTTCTTTGCCGAACTACATGGCAGCGACTGAATCAGCGAAGGCGAGAGTGCGTTCCGAGAGCGCCCCGAAGCAAAGACCGTCAAGGCCGTCGACACCGGAGAGGGAAAGAAGCGGATCAGCGAAGAAGCGCCTTAATTTTCCAGGTGGGGAAGGGTACGGAATTTTGGGGCAGAATCTGAAGAGGCCGAGCTTCAAGAGCGTGAATGGGGAGCAGGTGGGGATAGAGCAGCAGTCCAATTACTCTTCGTGCTGCACGGAGAGCTTTGGCTGTGAGATTTCTCCTTCTTCGACCAGTGATCTGAGAAGGTGGTTGAGGTAA | 2028 | 47.14 | MSILVNGESQVPPGFRFHPTEEELLQYYLKKKVSNQKIDLDVIRDVDLNKLEPWDIQEECKIGTTPQNDWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKVIYSFCRRIGMRKTLVFYKGRAPHGLKSDWIMHEYRLDDNSSESKVRKTLTSIFVSIVVGETAQEEGWVVCRIFKKVISRAGNFSVFVKISYSLFWIFVQKREKRRWSFRRQQSNLQEIKVTQEQNPLKPASEEQKRGVTAVVRLNKPCHGAREHYYAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVIDQRIKLTHETSNVKSSISNISSAIESRYLRDISDRKSISQSREGSRSTIPDDWDERSHTIEEVKAMLQQRRDQIAINRDRSLSRAFSHQIMRDSRNPSMGSECELDDRPKWQDQLMRRKPWESRGRSSTDQRADSIKTVEIDTSLPYTYLAPNFQRAPQNQHNLQQRSNPHSISSPVHHRSYKTSPPHNNSSFTPSPSKTRPLLVRSASPRCIREEKPFPTSQTPSLKSNYYYSMQNQSRGGGGSSTAVNNFVASLPNYMAATESAKARVRSESAPKQRPSRPSTPERERSGSAKKRLNFPGGEGYGILGQNLKRPSFKSVNGEQVGIEQQSNYSSCCTESFGCEISPSSTSDLRRWLR | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54615161 | 54626104 | - | Bma016099.1 | Bma02g01259 | 78509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 475 | 543 | - | - | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 407 | 453 | - | - | |
Bma02g01259 | 675 | PANTHER | PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 | 195 | 675 | - | - | |
Bma02g01259 | 675 | SUPERFAMILY | NAC domain | 7 | 178 | IPR036093 | GO:0003677|GO:0006355 | |
Bma02g01259 | 675 | ProSiteProfiles | NAC domain profile. | 11 | 178 | IPR003441 | GO:0003677|GO:0006355 | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 586 | 611 | - | - | |
Bma02g01259 | 675 | PANTHER | IQ-DOMAIN 5-RELATED | 195 | 675 | - | - | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 475 | 519 | - | - | |
Bma02g01259 | 675 | Pfam | Protein of unknown function (DUF4005) | 525 | 625 | IPR025064 | - | |
Bma02g01259 | 675 | SMART | iq_5 | 278 | 299 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | SMART | iq_5 | 255 | 277 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | Pfam | IQ calmodulin-binding motif | 283 | 299 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | Pfam | IQ calmodulin-binding motif | 260 | 277 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | Pfam | No apical meristem (NAM) protein | 12 | 139 | IPR003441 | GO:0003677|GO:0006355 | |
Bma02g01259 | 675 | Gene3D | - | 253 | 314 | - | - | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 351 | 371 | - | - | |
Bma02g01259 | 675 | Gene3D | NAC domain | 20 | 180 | IPR036093 | GO:0003677|GO:0006355 | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 581 | 621 | - | - | |
Bma02g01259 | 675 | ProSiteProfiles | IQ motif profile. | 256 | 284 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | ProSiteProfiles | IQ motif profile. | 280 | 307 | IPR000048 | GO:0005515 | |
Bma02g01259 | 675 | MobiDBLite | consensus disorder prediction | 415 | 453 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01259 | Bma-Chr2:54615161 | Bma07g01031 | Bma-Chr7:41597762 | 8.07E-93 | dispersed | |
Bma04g00856 | Bma-Chr4:10829575 | Bma02g01259 | Bma-Chr2:54615161 | 8.25E-31 | dispersed | |
Bma04g00927 | Bma-Chr4:12995086 | Bma02g01259 | Bma-Chr2:54615161 | 6.36E-49 | dispersed | |
Bma14g02027 | Bma-Chr14:43594429 | Bma02g01259 | Bma-Chr2:54615161 | 2.02E-54 | dispersed | |
Bma02g01251 | Bma-Chr2:54565541 | Bma02g01259 | Bma-Chr2:54615161 | 5.24E-13 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56926 | PF02365 | NAM | 9.30E-35 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g01259 | - | - | qsu:112008332 | 527.324 |