Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01259 ATGAGTATATTAGTAAACGGAGAATCTCAAGTTCCACCGGGGTTTCGATTTCATCCCACAGAAGAAGAACTGCTGCAATACTATTTGAAGAAGAAGGTTTCGAACCAGAAGATTGATCTGGACGTGATTCGCGACGTCGATCTGAACAAGCTGGAGCCATGGGATATACAAGAGGAGTGCAAAATTGGAACGACCCCACAAAATGATTGGTATTTTTTCAGCCATAAAGATAAGAAGTATCCGACGGGAACGAGGACGAACAGAGCCACCATGGCTGGATTTTGGAAAGCTACTGGGCGAGATAAGGTGATTTACAGCTTCTGCAGAAGAATCGGAATGAGAAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCTCATGGCCTTAAATCAGATTGGATCATGCATGAATATCGACTTGATGATAATTCCTCCGAATCAAAGGTACGCAAAACCCTGACCTCCATTTTTGTTTCCATTGTTGTTGGAGAAACAGCTCAGGAAGAAGGGTGGGTGGTTTGCAGAATATTCAAGAAGGTTATCTCTCGTGCAGGAAATTTTTCTGTTTTCGTCAAGATTTCTTACTCCTTGTTCTGGATCTTTGTGCAGAAGAGGGAGAAGCGGAGGTGGAGTTTCAGAAGACAGCAGTCCAATCTACAAGAAATCAAGGTGACCCAAGAGCAGAATCCATTAAAGCCAGCATCTGAAGAGCAGAAGCGCGGCGTCACCGCCGTGGTTCGGCTGAACAAGCCCTGTCATGGCGCTAGAGAGCACTACTACGCCATTTTGATACAAACTTCCTTTAGAGGGTACCTGGCCAGGAGAGCTCTGCGAGCGCTGAAAGGGCTGGTGAAACTGCAGGCGCTGGTGAGGGGTCACAATGTGAGAAAGCAAGCGAAAATGACCCTTAAATGCATGCAAGCTCTCGTTAGAGTCCAAGCTAGAGTGATAGATCAGCGAATCAAACTCACCCACGAAACCTCCAATGTCAAATCTTCCATCTCCAACATAAGCAGTGCCATAGAATCTCGCTACCTTCGAGACATTTCAGACAGAAAATCCATCTCTCAGTCAAGAGAGGGAAGTAGAAGTACAATACCTGATGATTGGGATGAACGTTCTCACACAATCGAAGAAGTTAAAGCAATGTTGCAACAGAGGAGAGATCAAATCGCCATTAACCGTGATCGATCCTTGTCGCGAGCTTTTTCTCACCAGATTATGAGAGATTCGAGGAATCCATCAATGGGAAGCGAATGTGAGCTAGACGACAGACCAAAGTGGCAAGATCAATTAATGAGAAGGAAGCCATGGGAGAGCAGGGGAAGATCTTCAACTGACCAGAGAGCTGATTCCATCAAAACAGTCGAAATCGACACTTCTCTTCCGTACACATACTTGGCGCCTAATTTCCAAAGAGCACCACAAAATCAACACAATCTTCAACAAAGATCTAATCCGCACTCTATTTCTTCGCCAGTCCACCACAGATCCTACAAAACCTCACCACCCCACAACAATTCCTCTTTCACTCCATCTCCGTCCAAAACCAGACCTCTACTCGTTCGATCCGCCAGCCCTCGCTGCATCAGAGAAGAAAAACCCTTCCCAACCTCCCAAACACCAAGCCTCAAGTCCAATTATTACTACAGCATGCAGAATCAAAGCAGAGGAGGAGGAGGAAGTAGCACTGCTGTAAACAACTTCGTAGCTTCTTTGCCGAACTACATGGCAGCGACTGAATCAGCGAAGGCGAGAGTGCGTTCCGAGAGCGCCCCGAAGCAAAGACCGTCAAGGCCGTCGACACCGGAGAGGGAAAGAAGCGGATCAGCGAAGAAGCGCCTTAATTTTCCAGGTGGGGAAGGGTACGGAATTTTGGGGCAGAATCTGAAGAGGCCGAGCTTCAAGAGCGTGAATGGGGAGCAGGTGGGGATAGAGCAGCAGTCCAATTACTCTTCGTGCTGCACGGAGAGCTTTGGCTGTGAGATTTCTCCTTCTTCGACCAGTGATCTGAGAAGGTGGTTGAGGTAA 2028 47.14 MSILVNGESQVPPGFRFHPTEEELLQYYLKKKVSNQKIDLDVIRDVDLNKLEPWDIQEECKIGTTPQNDWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKVIYSFCRRIGMRKTLVFYKGRAPHGLKSDWIMHEYRLDDNSSESKVRKTLTSIFVSIVVGETAQEEGWVVCRIFKKVISRAGNFSVFVKISYSLFWIFVQKREKRRWSFRRQQSNLQEIKVTQEQNPLKPASEEQKRGVTAVVRLNKPCHGAREHYYAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVIDQRIKLTHETSNVKSSISNISSAIESRYLRDISDRKSISQSREGSRSTIPDDWDERSHTIEEVKAMLQQRRDQIAINRDRSLSRAFSHQIMRDSRNPSMGSECELDDRPKWQDQLMRRKPWESRGRSSTDQRADSIKTVEIDTSLPYTYLAPNFQRAPQNQHNLQQRSNPHSISSPVHHRSYKTSPPHNNSSFTPSPSKTRPLLVRSASPRCIREEKPFPTSQTPSLKSNYYYSMQNQSRGGGGSSTAVNNFVASLPNYMAATESAKARVRSESAPKQRPSRPSTPERERSGSAKKRLNFPGGEGYGILGQNLKRPSFKSVNGEQVGIEQQSNYSSCCTESFGCEISPSSTSDLRRWLR 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54615161 54626104 - Bma016099.1 Bma02g01259 78509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01259 675 MobiDBLite consensus disorder prediction 475 543 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 407 453 - -
Bma02g01259 675 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 195 675 - -
Bma02g01259 675 SUPERFAMILY NAC domain 7 178 IPR036093 GO:0003677|GO:0006355
Bma02g01259 675 ProSiteProfiles NAC domain profile. 11 178 IPR003441 GO:0003677|GO:0006355
Bma02g01259 675 MobiDBLite consensus disorder prediction 586 611 - -
Bma02g01259 675 PANTHER IQ-DOMAIN 5-RELATED 195 675 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 475 519 - -
Bma02g01259 675 Pfam Protein of unknown function (DUF4005) 525 625 IPR025064 -
Bma02g01259 675 SMART iq_5 278 299 IPR000048 GO:0005515
Bma02g01259 675 SMART iq_5 255 277 IPR000048 GO:0005515
Bma02g01259 675 Pfam IQ calmodulin-binding motif 283 299 IPR000048 GO:0005515
Bma02g01259 675 Pfam IQ calmodulin-binding motif 260 277 IPR000048 GO:0005515
Bma02g01259 675 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Bma02g01259 675 Gene3D - 253 314 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 351 371 - -
Bma02g01259 675 Gene3D NAC domain 20 180 IPR036093 GO:0003677|GO:0006355
Bma02g01259 675 MobiDBLite consensus disorder prediction 581 621 - -
Bma02g01259 675 ProSiteProfiles IQ motif profile. 256 284 IPR000048 GO:0005515
Bma02g01259 675 ProSiteProfiles IQ motif profile. 280 307 IPR000048 GO:0005515
Bma02g01259 675 MobiDBLite consensus disorder prediction 415 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01259 - - - qsu:112008332 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01259 Bma-Chr2:54615161 Bma07g01031 Bma-Chr7:41597762 8.07E-93 dispersed
Bma04g00856 Bma-Chr4:10829575 Bma02g01259 Bma-Chr2:54615161 8.25E-31 dispersed
Bma04g00927 Bma-Chr4:12995086 Bma02g01259 Bma-Chr2:54615161 6.36E-49 dispersed
Bma14g02027 Bma-Chr14:43594429 Bma02g01259 Bma-Chr2:54615161 2.02E-54 dispersed
Bma02g01251 Bma-Chr2:54565541 Bma02g01259 Bma-Chr2:54615161 5.24E-13 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56926 PF02365 NAM 9.30E-35 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01259 Bma_Chr02 FPKM 24.98205 24.178371 24.015814 24.226952 15.052557 13.626 13.860751 31.406824 33.674084 33.14333