Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01259 ATGAGTATATTAGTAAACGGAGAATCTCAAGTTCCACCGGGGTTTCGATTTCATCCCACAGAAGAAGAACTGCTGCAATACTATTTGAAGAAGAAGGTTTCGAACCAGAAGATTGATCTGGACGTGATTCGCGACGTCGATCTGAACAAGCTGGAGCCATGGGATATACAAGAGGAGTGCAAAATTGGAACGACCCCACAAAATGATTGGTATTTTTTCAGCCATAAAGATAAGAAGTATCCGACGGGAACGAGGACGAACAGAGCCACCATGGCTGGATTTTGGAAAGCTACTGGGCGAGATAAGGTGATTTACAGCTTCTGCAGAAGAATCGGAATGAGAAAAACCCTAGTTTTCTACAAAGGAAGAGCTCCTCATGGCCTTAAATCAGATTGGATCATGCATGAATATCGACTTGATGATAATTCCTCCGAATCAAAGGTACGCAAAACCCTGACCTCCATTTTTGTTTCCATTGTTGTTGGAGAAACAGCTCAGGAAGAAGGGTGGGTGGTTTGCAGAATATTCAAGAAGGTTATCTCTCGTGCAGGAAATTTTTCTGTTTTCGTCAAGATTTCTTACTCCTTGTTCTGGATCTTTGTGCAGAAGAGGGAGAAGCGGAGGTGGAGTTTCAGAAGACAGCAGTCCAATCTACAAGAAATCAAGGTGACCCAAGAGCAGAATCCATTAAAGCCAGCATCTGAAGAGCAGAAGCGCGGCGTCACCGCCGTGGTTCGGCTGAACAAGCCCTGTCATGGCGCTAGAGAGCACTACTACGCCATTTTGATACAAACTTCCTTTAGAGGGTACCTGGCCAGGAGAGCTCTGCGAGCGCTGAAAGGGCTGGTGAAACTGCAGGCGCTGGTGAGGGGTCACAATGTGAGAAAGCAAGCGAAAATGACCCTTAAATGCATGCAAGCTCTCGTTAGAGTCCAAGCTAGAGTGATAGATCAGCGAATCAAACTCACCCACGAAACCTCCAATGTCAAATCTTCCATCTCCAACATAAGCAGTGCCATAGAATCTCGCTACCTTCGAGACATTTCAGACAGAAAATCCATCTCTCAGTCAAGAGAGGGAAGTAGAAGTACAATACCTGATGATTGGGATGAACGTTCTCACACAATCGAAGAAGTTAAAGCAATGTTGCAACAGAGGAGAGATCAAATCGCCATTAACCGTGATCGATCCTTGTCGCGAGCTTTTTCTCACCAGATTATGAGAGATTCGAGGAATCCATCAATGGGAAGCGAATGTGAGCTAGACGACAGACCAAAGTGGCAAGATCAATTAATGAGAAGGAAGCCATGGGAGAGCAGGGGAAGATCTTCAACTGACCAGAGAGCTGATTCCATCAAAACAGTCGAAATCGACACTTCTCTTCCGTACACATACTTGGCGCCTAATTTCCAAAGAGCACCACAAAATCAACACAATCTTCAACAAAGATCTAATCCGCACTCTATTTCTTCGCCAGTCCACCACAGATCCTACAAAACCTCACCACCCCACAACAATTCCTCTTTCACTCCATCTCCGTCCAAAACCAGACCTCTACTCGTTCGATCCGCCAGCCCTCGCTGCATCAGAGAAGAAAAACCCTTCCCAACCTCCCAAACACCAAGCCTCAAGTCCAATTATTACTACAGCATGCAGAATCAAAGCAGAGGAGGAGGAGGAAGTAGCACTGCTGTAAACAACTTCGTAGCTTCTTTGCCGAACTACATGGCAGCGACTGAATCAGCGAAGGCGAGAGTGCGTTCCGAGAGCGCCCCGAAGCAAAGACCGTCAAGGCCGTCGACACCGGAGAGGGAAAGAAGCGGATCAGCGAAGAAGCGCCTTAATTTTCCAGGTGGGGAAGGGTACGGAATTTTGGGGCAGAATCTGAAGAGGCCGAGCTTCAAGAGCGTGAATGGGGAGCAGGTGGGGATAGAGCAGCAGTCCAATTACTCTTCGTGCTGCACGGAGAGCTTTGGCTGTGAGATTTCTCCTTCTTCGACCAGTGATCTGAGAAGGTGGTTGAGGTAA 2028 47.14 MSILVNGESQVPPGFRFHPTEEELLQYYLKKKVSNQKIDLDVIRDVDLNKLEPWDIQEECKIGTTPQNDWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKVIYSFCRRIGMRKTLVFYKGRAPHGLKSDWIMHEYRLDDNSSESKVRKTLTSIFVSIVVGETAQEEGWVVCRIFKKVISRAGNFSVFVKISYSLFWIFVQKREKRRWSFRRQQSNLQEIKVTQEQNPLKPASEEQKRGVTAVVRLNKPCHGAREHYYAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVIDQRIKLTHETSNVKSSISNISSAIESRYLRDISDRKSISQSREGSRSTIPDDWDERSHTIEEVKAMLQQRRDQIAINRDRSLSRAFSHQIMRDSRNPSMGSECELDDRPKWQDQLMRRKPWESRGRSSTDQRADSIKTVEIDTSLPYTYLAPNFQRAPQNQHNLQQRSNPHSISSPVHHRSYKTSPPHNNSSFTPSPSKTRPLLVRSASPRCIREEKPFPTSQTPSLKSNYYYSMQNQSRGGGGSSTAVNNFVASLPNYMAATESAKARVRSESAPKQRPSRPSTPERERSGSAKKRLNFPGGEGYGILGQNLKRPSFKSVNGEQVGIEQQSNYSSCCTESFGCEISPSSTSDLRRWLR 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54615161 54626104 - Bma016099.1 Bma02g01259 78509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01259 675 MobiDBLite consensus disorder prediction 475 543 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 407 453 - -
Bma02g01259 675 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 195 675 - -
Bma02g01259 675 SUPERFAMILY NAC domain 7 178 IPR036093 GO:0003677|GO:0006355
Bma02g01259 675 ProSiteProfiles NAC domain profile. 11 178 IPR003441 GO:0003677|GO:0006355
Bma02g01259 675 MobiDBLite consensus disorder prediction 586 611 - -
Bma02g01259 675 PANTHER IQ-DOMAIN 5-RELATED 195 675 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 475 519 - -
Bma02g01259 675 Pfam Protein of unknown function (DUF4005) 525 625 IPR025064 -
Bma02g01259 675 SMART iq_5 278 299 IPR000048 GO:0005515
Bma02g01259 675 SMART iq_5 255 277 IPR000048 GO:0005515
Bma02g01259 675 Pfam IQ calmodulin-binding motif 283 299 IPR000048 GO:0005515
Bma02g01259 675 Pfam IQ calmodulin-binding motif 260 277 IPR000048 GO:0005515
Bma02g01259 675 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Bma02g01259 675 Gene3D - 253 314 - -
Bma02g01259 675 MobiDBLite consensus disorder prediction 351 371 - -
Bma02g01259 675 Gene3D NAC domain 20 180 IPR036093 GO:0003677|GO:0006355
Bma02g01259 675 MobiDBLite consensus disorder prediction 581 621 - -
Bma02g01259 675 ProSiteProfiles IQ motif profile. 256 284 IPR000048 GO:0005515
Bma02g01259 675 ProSiteProfiles IQ motif profile. 280 307 IPR000048 GO:0005515
Bma02g01259 675 MobiDBLite consensus disorder prediction 415 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01259 Bma-Chr2:54615161 Bma07g01031 Bma-Chr7:41597762 8.07E-93 dispersed
Bma04g00856 Bma-Chr4:10829575 Bma02g01259 Bma-Chr2:54615161 8.25E-31 dispersed
Bma04g00927 Bma-Chr4:12995086 Bma02g01259 Bma-Chr2:54615161 6.36E-49 dispersed
Bma14g02027 Bma-Chr14:43594429 Bma02g01259 Bma-Chr2:54615161 2.02E-54 dispersed
Bma02g01251 Bma-Chr2:54565541 Bma02g01259 Bma-Chr2:54615161 5.24E-13 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56926 PF02365 NAM 9.30E-35 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01259 - - qsu:112008332 527.324