Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01269 ATGGTTGAACACATCACCAACAACAATGCTCCAATGCCCCATGCTCATCTCCATGTTGAGATGGGATCATTAGACGAACGATCTAATTTTTACTTCGAAGATGAGAGCCTTATCAGTCCTGCATCAGTAGCTGCAAAGAAACATTCTTTTCAAGAGTCTTTACGCATATCTTCATCTACTAGTAATAGGAAGACTTGGTTTTCTCAAGACATGGGGTGTAGGGTGATTGATAGTATCAAAATCGTCGTCTTTTCCACAAAAATCAACGTCCTCATGCCATTTGGGCCTCTGGCAATCTTGGTTTATAACCTATCTGGCCATCATGGATGGGTCTTTCTCTTAAGCTTATTAGGGATTATACCTCTGGCTGAGAGATTGGGTTATGCAACTGAGCAGCTGGCTTGCTACACTGGACCCACAGTTGGAGGTCTTCTCAATGCTACTTTTGGAAATGCAACGGAATTGATAATATCCATTTACGCATTGAGGAAGGGGATGATACGTGTCGTTCAACAGTCATTACTCGGCTCGATTTTGTCAAACATGTTATTAGTGCTTGGATGTGCATTCTTTGCTGGTGGTCTCGTGTGTTCTGCTCGAGAACAGTTTTTCACTAAGTCTTCTGCTACTGTGAACTCTGGATTACTGCTAATGGCGGTCATGGGTCTTCTATTTCCAGCAGTCCTTCACTCCACACATACTGAATTGCATTTTGGAAAGTCTGAATTGGCTCTTTCGAGATTCAGTAGCTGTATTATGCTGGTGGCATATGCTGCATATCTTTTTTTTCAGTTGAGAAGTGATCACAATCATTACATCTCAGTTGACGAGGCTGAAGTTCAGGCTGAAGAGAGTCCAGATGATGATGAGGTACCTGAGATCTCTAAATGGGAGTCAATAATTTGGTTGACTATTTTGACATCATGTATTTCAGTCCTCTCAGAATATCTAGTAAATGCCATAGAGGGAGCATCAGTGGCAATGAAAATACCAGTAGCATTCATTAGTGTGATTCTGCTCCCGATTGTCGGTAATGCTGCCGAGCATGCAGGTGCTGTAATGTTTGCCATGAAAGACAAGCTTGACATATCTTTGGGAGTTGCCATTGGATCATCAACTCAGATATCTATGTTTGGGATTCCGTTTTGTGTTGTTGTTGGATGGGTCATGGGACGTCCGATGGACTTAAATTTTCAACTTTTCGAGACAGCCACGCTTCTCATGACTGTCATAGTTGTAGCCTTTATGCTTCAGGATGGAACTTCTAATTACTTCAAAGGGCTAATGCTTATTCTTTGCTACCTCGTTGTAGCAGCAAGTTTTTTTGTACATAGAGATCCTTCTTCAGTTGCCGATAAGACTCCAAAGTCAGGTCCTTAG 1380 42.03 MVEHITNNNAPMPHAHLHVEMGSLDERSNFYFEDESLISPASVAAKKHSFQESLRISSSTSNRKTWFSQDMGCRVIDSIKIVVFSTKINVLMPFGPLAILVYNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGPTVGGLLNATFGNATELIISIYALRKGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVCSAREQFFTKSSATVNSGLLLMAVMGLLFPAVLHSTHTELHFGKSELALSRFSSCIMLVAYAAYLFFQLRSDHNHYISVDEAEVQAEESPDDDEVPEISKWESIIWLTILTSCISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVVGWVMGRPMDLNFQLFETATLLMTVIVVAFMLQDGTSNYFKGLMLILCYLVVAASFFVHRDPSSVADKTPKSGP 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54712794 54715647 + Bma016109.1 Bma02g01269 78519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01269 459 Gene3D - 139 281 IPR044880 -
Bma02g01269 459 Gene3D - 287 443 IPR044880 -
Bma02g01269 459 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 456 - -
Bma02g01269 459 TIGRFAM caca2: calcium/proton exchanger 78 442 - -
Bma02g01269 459 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016021|GO:0055085
Bma02g01269 459 Pfam Sodium/calcium exchanger protein 300 439 IPR004837 GO:0016021|GO:0055085
Bma02g01269 459 TIGRFAM cax: calcium/proton exchanger 92 442 IPR004798 GO:0006816|GO:0015369
Bma02g01269 459 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 456 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01269 Bma-Chr2:54712794 Bma09g01003 Bma-Chr9:49521718 0 dispersed
Bma01g01790 Bma-Chr1:62308527 Bma02g01269 Bma-Chr2:54712794 1.72E-121 transposed
Bma12g00897 Bma-Chr12:40332592 Bma02g01269 Bma-Chr2:54712794 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01269 K07300 - qsu:112036201 673.315