Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01294 ATGGGTTATCTGTGTGATTTCTGTGGAGAGCAAAGGTCGATGGTCTATTGCCGTTCTGATGCGGCATGTTTATGTTTATCATGCGATCGAAGTGTCCATTCCGCCAATGCCTTGTCAAAGCGCCATTCAAGAACATTACTATGCGAAAAATGCAATTCCCAGCCAGCAATTGTAAGATGTGTTGAAGAGAATCTCTCTCTTTGCCAAAATTGTGATTGGACGGGTCATGGCTCATCCACCTCTGCAGCTGCGCACAAACGGCAGACGATAAATTGTTACTCTGGTTGTCCATCTGCTGCCGAACTTTCCTCAATATGGTCTTTTGTTTTGGATCTTCCTGCTGCTGAGGGCGAGGCATGTGAAAAAGAATTGGTATTGATGAGTATTAATGAGAATAGTGCAAAGAATAGCTGGGACCATTCTAACGATTACAACGGTCAAAATGCACCTAATTCAGCCAAGCATAATGACAGCATATCAACTGGTTGGGCAGGTTCTTCTCCGATGCCCAAGCTCGGCTCTCTGCCTCATCTTCAAAATCCTCCTTTTGGGTCTTCTGATATCACTTTGCCCAAGTTGTGCTGTCCTGGAACTAAAGATGCTGGTGGATTCTGTGAAGGGGACGTTCTTGATGATGATTTCAATCTGGAAGAACTGGATTTTGATATTGAAAATTATGAGGAATTATTTCGTGTAGCTCTCAATCAATCCGAAGAGCTTTTTGAGAATGGTGGGATCGATAGCTTGTTCAGGACAAAGGATATACCGGCTGCAGATTCCTGTTGCCAGAGTGAAGTCGCTGCTGAGGAGTTATCGGTTGGACCGGTTAACAACGCTATGCAGCCAGCGTGTAGTACAGCAGCATCGGCTGATTCTATGATGAGCACCAAAACAGACTCGATCCTTTATTTTAATGCAAGACAAGCACATTCGAGTCAGCCGCTCTCTAGCCATGGTGGAGAGAGCAGTGTTGGAGATTGGGGAGCTTCGTCAATGCTTCCAATGGGAGAGCATTCGTGGCGACCACAGTGCCACGAGAGTTCTACCTCTATCCAATCTGCTAATCGGAGTAATGCTGTCCTCCGTTACCAAAAGAAGAAGAAGGATCGCAAGTTTGAGAAAAGAGTAAGGTATGCTTCTCGGAAAGCGAGGGCTGACGTAAGAAGGCGAGTGAAGGGGCGGTTTGTCAAAGCTGGAGAAGCTTATGATTATGACCCATTGAGCCAAACCAGAAGCTACTGA 1242 45.81 MGYLCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLLCEKCNSQPAIVRCVEENLSLCQNCDWTGHGSSTSAAAHKRQTINCYSGCPSAAELSSIWSFVLDLPAAEGEACEKELVLMSINENSAKNSWDHSNDYNGQNAPNSAKHNDSISTGWAGSSPMPKLGSLPHLQNPPFGSSDITLPKLCCPGTKDAGGFCEGDVLDDDFNLEELDFDIENYEELFRVALNQSEELFENGGIDSLFRTKDIPAADSCCQSEVAAEELSVGPVNNAMQPACSTAASADSMMSTKTDSILYFNARQAHSSQPLSSHGGESSVGDWGASSMLPMGEHSWRPQCHESSTSIQSANRSNAVLRYQKKKKDRKFEKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55121467 55123656 + Bma016130.1 Bma02g01294 78544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01294 413 MobiDBLite consensus disorder prediction 335 357 - -
Bma02g01294 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bma02g01294 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Bma02g01294 413 MobiDBLite consensus disorder prediction 138 180 - -
Bma02g01294 413 CDD Bbox1_BBX-like 47 90 - -
Bma02g01294 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
Bma02g01294 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 413 - -
Bma02g01294 413 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bma02g01294 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma02g01294 413 CDD Bbox1_BBX-like 4 47 - -
Bma02g01294 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Bma02g01294 413 MobiDBLite consensus disorder prediction 138 167 - -
Bma02g01294 413 Coils Coil 216 243 - -
Bma02g01294 413 MobiDBLite consensus disorder prediction 342 357 - -
Bma02g01294 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01294 Bma08g00690 CCT
Bma02g01294 Bma03g00658 CCT
Bma02g01294 Bma12g00873 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01294 Bma-Chr2:55121467 Bma08g00690 Bma-Chr8:42107098 7.00E-139 dispersed
Bma02g01335 Bma-Chr2:55845403 Bma02g01294 Bma-Chr2:55121467 1.06E-59 transposed
Bma15g00012 Bma-Chr15:172318 Bma02g01294 Bma-Chr2:55121467 3.85E-30 transposed
Bma12g00873 Bma-Chr12:39803012 Bma02g01294 Bma-Chr2:55121467 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56929 PF06203 CCT 3.20E-14 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01294 - - jre:109000761 535.413