Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01295 CACCTCGCTCATTCCGATATCTACATCGAGGAATTCCACCGGAGGGTGCCAGACGTTCGATTCGACAAAGCGTGCAAAAGTCGGGCGCATGAGCTGAGCTGTTCGGTTTGCTTGACACAGTTTGAGCCTGAATCAGAGATCAACCTGTTATCTTGTGGCCATATTTTTCACCAAGTGTGCTTGGAGAAGTGGCTAGACTACAGGAACACTACCTGCCCTATGTGTAGGACTCCATTACTGCCTGAAGAAGAGAGATCTTCATTTTGGTAA 270 48.15 HLAHSDIYIEEFHRRVPDVRFDKACKSRAHELSCSVCLTQFEPESEINLLSCGHIFHQVCLEKWLDYRNTTCPMCRTPLLPEEERSSFW 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55130209 55130478 + Bma016131.1 Bma02g01295 78545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01295 89 PANTHER - 5 88 IPR044249 -
Bma02g01295 89 SMART ringv_2 33 76 IPR011016 GO:0008270
Bma02g01295 89 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 5 88 - -
Bma02g01295 89 SUPERFAMILY RING/U-box 29 81 - -
Bma02g01295 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
Bma02g01295 89 ProSiteProfiles Zinc finger RING-type profile. 34 76 IPR001841 -
Bma02g01295 89 SMART ring_2 34 75 IPR001841 -
Bma02g01295 89 Pfam Ring finger domain 33 76 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01295 Bma03g00660 CCT
Bma02g01295 Bma12g00872 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01295 Bma-Chr2:55130209 Bma03g00660 Bma-Chr3:5401017 6.44E-31 dispersed
Bma12g01164 Bma-Chr12:44174649 Bma02g01295 Bma-Chr2:55130209 7.54E-09 transposed
Bma12g00872 Bma-Chr12:39798997 Bma02g01295 Bma-Chr2:55130209 2.82E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01295 K16285 - tcc:18612514 140.198