Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01299 ATGGCGGACTCGGATAATGAATCGGGAGGGCCTAACTACAACGCGAATAGCGAGCACTCGAGGGAGCAAGACAGGTTCTTACCCATAGCCAACGTGAGCAGAATAATGAAGAAAGCTCTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTGCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGAGAGAGAAAAGGAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACTACTCTAGGATTCGAAGAGTACGTGGAGCCTCTGAAAGTCTATCTACAGAAGTACAGAGAAACAGAAGGAGAGAAGAGCTCAGTCGGACGACAAGGTGAAAAAGAGGGCGGCGGAGGTGGGTCCATCTCGGGCGGGACTGATGCTGCCGGATCTGGAAGTGGAGGTGGCTTTAATGGAATGGGGGCGATGTACGGTGGGATTATCATGGGTCATCATCAGTCACACGTGTACGGTCCAGGTGGATATCATCATATGGGTGGTGGTTCTCAGAAGGGTGGAACCGGCGGTCAGGGCTCTGGCAACCGGTGA 582 52.41 MADSDNESGGPNYNANSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRETEGEKSSVGRQGEKEGGGGGSISGGTDAAGSGSGGGFNGMGAMYGGIIMGHHQSHVYGPGGYHHMGGGSQKGGTGGQGSGNR 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55150543 55151124 - Bma016135.1 Bma02g01299 78549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01299 193 MobiDBLite consensus disorder prediction 1 24 - -
Bma02g01299 193 MobiDBLite consensus disorder prediction 111 141 - -
Bma02g01299 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma02g01299 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bma02g01299 193 Gene3D Histone, subunit A 13 134 IPR009072 GO:0046982
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bma02g01299 193 SUPERFAMILY Histone-fold 23 125 IPR009072 GO:0046982
Bma02g01299 193 MobiDBLite consensus disorder prediction 171 193 - -
Bma02g01299 193 MobiDBLite consensus disorder prediction 1 17 - -
Bma02g01299 193 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma02g01299 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01299 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101219076 223.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01299 Bma-Chr2:55150543 Bma13g01113 Bma-Chr13:44263196 7.72E-72 dispersed
Bma11g00227 Bma-Chr11:2029420 Bma02g01299 Bma-Chr2:55150543 7.33E-13 dispersed
Bma03g00997 Bma-Chr3:10874010 Bma02g01299 Bma-Chr2:55150543 1.18E-58 transposed
Bma13g00635 Bma-Chr13:15209636 Bma02g01299 Bma-Chr2:55150543 1.02E-33 transposed
Bma12g00846 Bma-Chr12:39281855 Bma02g01299 Bma-Chr2:55150543 3.12E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g00590 BCT,CCT 2 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 80.2 3.1e-48 188.7
Bma14g00951 . 1 88 CCAAT-HAP3 Transcription Factor Family AT5G47670 93.2 2.3e-43 172.6
Bma02g01299 . 7 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.3 3.2e-37 152.1
Bma12g00846 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 5.5e-37 151.4
Bma10g00590 BCT,CCT 19 155 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.9 6.0e-47 184.5
Bma14g00951 . 1 103 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.3 3.2e-40 162.2
Bma13g01113 BCT,CCT 21 149 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.1 7.3e-37 151.0
Bma12g00846 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.8 1.9e-57 218.8
Bma02g01299 . 1 166 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.2 2.1e-56 215.3
Bma13g01113 BCT,CCT 1 161 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 1.3e-53 206.1
Bma14g00682 CCT 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 64.8 3.7e-48 188.0
Bma08g00951 . 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.3e-44 173.3
Bma08g00961 CCT,ECH 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.3e-44 173.3
Bma08g01142 CCT,ECH 11 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.3 2.7e-43 171.8
Bma04g00620 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.6e-43 171.0
Bma03g00997 . 22 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.5 7.9e-43 170.2
Bma08g00951 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-50 194.5
Bma08g00961 CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-50 194.5
Bma04g00620 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.4e-49 190.7
Bma08g01142 CCT,ECH 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.6 7.7e-48 186.8
Bma13g01113 BCT,CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.0 4.4e-43 171.0
Bma12g00846 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 7.5e-43 170.2
Bma02g01299 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.7e-42 169.1
Bma14g00682 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-42 167.9
Bma03g00997 . 7 126 CCAAT-HAP3 Transcription Factor Family AT2G38880 65.9 1.6e-40 162.5
Bma13g01113 BCT,CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 5.3e-39 157.5
Bma14g00682 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 9.0e-39 156.8
Bma02g01299 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.8e-38 154.1
Bma12g00846 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 7.6e-38 153.7
Bma08g01142 CCT,ECH 25 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.0 8.4e-37 150.2
Bma04g00620 . 1 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.6 3.8e-59 224.6
Bma08g00951 . 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.9 8.7e-56 213.4
Bma08g00961 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.9 8.7e-56 213.4
Bma08g01142 CCT,ECH 7 118 CCAAT-HAP3 Transcription Factor Family AT2G37060 82.5 1.3e-48 189.5
Bma14g00682 CCT 1 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.4 2.8e-46 181.8
Bma12g00846 . 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 1.8e-45 179.1
Bma02g01299 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 3.1e-45 178.3
Bma13g01113 BCT,CCT 1 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.4 1.5e-44 176.0
Bma03g00997 . 23 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.4 2.2e-38 155.6
Bma12g00846 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.5 1.3e-45 179.9
Bma02g01299 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 3.9e-45 178.3
Bma03g00997 . 10 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 77.8 5.6e-44 174.5
Bma14g00682 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.2 9.5e-44 173.7
Bma13g01113 BCT,CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.1e-42 170.2
Bma04g00620 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.7e-40 162.9
Bma08g00951 . 4 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.3 1.1e-39 160.2
Bma08g00961 CCT,ECH 4 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.3 1.1e-39 160.2
Bma08g01142 CCT,ECH 26 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.0 1.1e-39 160.2
Bma13g01113 BCT,CCT 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.9 9.9e-53 203.4
Bma12g00846 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.3e-51 196.8
Bma02g01299 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 3.5e-50 194.9
Bma14g00682 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 1.6e-47 186.0
Bma08g00951 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.4e-44 173.7
Bma08g00961 CCT,ECH 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.4e-44 173.7
Bma04g00620 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 9.3e-43 170.2
Bma08g01142 CCT,ECH 26 118 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.8 1.0e-41 166.8
Bma03g00997 . 18 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.0 3.0e-41 165.2
Bma04g00620 . 16 168 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.5 1.6e-60 229.2
Bma08g00951 . 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 9.8e-55 209.9
Bma08g00961 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 9.8e-55 209.9
Bma08g01142 CCT,ECH 12 118 CCAAT-HAP3 Transcription Factor Family AT3G53340 83.3 6.8e-48 187.2
Bma12g00846 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.4e-45 177.6
Bma02g01299 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.4e-45 177.6
Bma14g00682 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.9 1.6e-44 176.0
Bma13g01113 BCT,CCT 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.9 1.1e-42 169.9
Bma03g00997 . 23 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.4 1.3e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56930 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g01299 Bma_Chr02 FPKM 17.171297 20.926079 20.263691 22.197512 22.984001 20.080078 23.602964 45.288441 41.801357 43.205307