Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01299 ATGGCGGACTCGGATAATGAATCGGGAGGGCCTAACTACAACGCGAATAGCGAGCACTCGAGGGAGCAAGACAGGTTCTTACCCATAGCCAACGTGAGCAGAATAATGAAGAAAGCTCTACCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTGCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGAGAGAGAAAAGGAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACTACTCTAGGATTCGAAGAGTACGTGGAGCCTCTGAAAGTCTATCTACAGAAGTACAGAGAAACAGAAGGAGAGAAGAGCTCAGTCGGACGACAAGGTGAAAAAGAGGGCGGCGGAGGTGGGTCCATCTCGGGCGGGACTGATGCTGCCGGATCTGGAAGTGGAGGTGGCTTTAATGGAATGGGGGCGATGTACGGTGGGATTATCATGGGTCATCATCAGTCACACGTGTACGGTCCAGGTGGATATCATCATATGGGTGGTGGTTCTCAGAAGGGTGGAACCGGCGGTCAGGGCTCTGGCAACCGGTGA 582 52.41 MADSDNESGGPNYNANSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRETEGEKSSVGRQGEKEGGGGGSISGGTDAAGSGSGGGFNGMGAMYGGIIMGHHQSHVYGPGGYHHMGGGSQKGGTGGQGSGNR 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55150543 55151124 - Bma016135.1 Bma02g01299 78549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01299 193 MobiDBLite consensus disorder prediction 1 24 - -
Bma02g01299 193 MobiDBLite consensus disorder prediction 111 141 - -
Bma02g01299 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma02g01299 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Bma02g01299 193 Gene3D Histone, subunit A 13 134 IPR009072 GO:0046982
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Bma02g01299 193 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Bma02g01299 193 SUPERFAMILY Histone-fold 23 125 IPR009072 GO:0046982
Bma02g01299 193 MobiDBLite consensus disorder prediction 171 193 - -
Bma02g01299 193 MobiDBLite consensus disorder prediction 1 17 - -
Bma02g01299 193 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma02g01299 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01299 Bma-Chr2:55150543 Bma13g01113 Bma-Chr13:44263196 7.72E-72 dispersed
Bma11g00227 Bma-Chr11:2029420 Bma02g01299 Bma-Chr2:55150543 7.33E-13 dispersed
Bma03g00997 Bma-Chr3:10874010 Bma02g01299 Bma-Chr2:55150543 1.18E-58 transposed
Bma13g00635 Bma-Chr13:15209636 Bma02g01299 Bma-Chr2:55150543 1.02E-33 transposed
Bma12g00846 Bma-Chr12:39281855 Bma02g01299 Bma-Chr2:55150543 3.12E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56930 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01299 K08065 - csv:101219076 223.787