Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01307 ATGTCTTGTTCTTCCGGAGCTAAGAGTCTTCTCAAGCTTTCGAAGTTATTTGTGAAGATTCAAAGGTGGCTTTTGATGGGAATGGCTCAGAATTGCAAGTTCTGTGTTTCTTGTGGAAAAGTATCAGCTGGGTTTAGGTTGAAGAAGGCGAAGGAGAATGGGAATGTCCTTTCTTCGATAACAGGGTGGAAAAGGAAGGTTCTTGTTCTATGTGCTGTAGGTTTAGTTTTCATTTTCAGTATCTGTTTTTTCTGGAGTTCTTTCGATGGTTCATGGACGTCTAAACAAAAGCCCTTGAGTTCATTCGGAGGCAAAACTGAAACCTTTCTGCAGCATTTCAATGTCAGCAATAATCACCTTCTGTTTCTTAGTTCTTTATTTGCCAAATCAGATCAGATAGTATCATTCCAATGTACCAAAGGTTCGAGTCCTGACATGCATATCAAAAATGGCATTTCTTGTGCTTTGAAGGTACTATCCTCAGAGGAGCTACTGGTCCGACATGATCAATTGATCGAGGAGCACTTAGAAACAAATGATCAATGCCCAATTCTCGGTGAGAAGATCCCAAATTACTTCGATCAGTCTCTCTCTCACAATAAGAGAATGTTAGCTTCAGATTCTTTGATTTCGTCAAAACCTACTGATATTCACTCTTTCGGAAAGAAGATCTTGCAAACAAGAGGATTCCCGAGCTGTGCAAAAGATTGTTGCAAAAGTTTATGTACTTTGGTGAAGGGAAGCTTGTGGGTGATTTTTGGAGTGATTATTTATCAGATGATCCCTTGTTTTGACTTAAAATTGTGGTGGATTCAAAATGAACTGGTAGATCAAAATATTCTGCAACAGCCAGTGGCTAATCAGGTGTTATCCCAGCAAAAGCAGCAGAAGGTATTTCCTCAGCAAGTACAGCCGCATCATGCCAAGAATCCCCCTAAAGGGGCTGGAAAGTGGTGGAAGAAGCTTCTACTACTGTTTGTAGTAGTGGGTGTCATTACTTCGATTTGGTTATTTTGGGATTTAAATAGTAAAATTAATTTGAGGAGAGAAGAGACTCTTGCCAACATGTGTGATGAACGGGCTAGAATGTTGCAGGACCAGTTTAATGTGAGCATGAACCATGTTCATGCCTTGGCTATTCTTGTCTCAACCTTTCACCATGGGAAACACCCTTCTGCCATGGATCAGAAAATTTTTGGTGAATACACGGAAAGAACGGCTTTTGAGAGACCTTTAACCAGTGGTGTTGCATATGCTTTAAGAGTGAACCACTTGGAAAGAGATATATTTGAGAAAACACATGGGTGGACAATAAAGAAAATGGAAACTGAGGACCAGACACTGGTTCGAGATTGTATCCCGGAAAATTTGGACCCTGCACCTATTCAAAAGGAATATGCACCTGTAATATTTTCCCAAGAAACTGTCTCCCATATTGTCTCTATTGACATGATGTCTGGAAAGGAAGATCGTGAAAACATATTGCGGGCCAGAGCATCTGGGAAGGGAGTACTTACATCGCCTTTTAAGCTACTGAAATCCAATCATCTTGGTGTTGTTCTAACTTTTGCTGTCTATAACAAGGAGCTTCCTCCCAATGCTACACCAGATCAACGTGTTGAAGCTACTGTCGGGTATCTTGGGGCATCTTATGATGTACCTTCTCTGGTGGAGAAGCTTCTGCACCAGCTTGCCAGCAAACAGACAATTGTCGTAAATGTATACGATACGACGAATGATTCTTCTCCCATAAAGATGTATGGTCCAGATTTCACCGATACAGGGTTACTACAAGTTAGTAACCTTGATTTTGGTGATCCACAGAGGAAGCATGAGATACATTGTAGATTCAAACAAAAACCAACCTTACCTTGGACGGCAATATATGCATCAGTGGGAGTCCTTGTCATTACTCTCCTAGTCGGCCATATATTTCACGCTGGTATTTGTCGAATTGCAGAAGTTGAGAACGAGTATCGGAAGATGATGGAGCTCAAAGTTCGTGCCGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCCCATGAGATCAGGACACCAATGAATGGGGTATTAGGAATGCTAAAATTGCTGATGGACACGGATCTCGATGAAGAACAACTGGACTACGCTTATACTGCCCATGACAGTGGAGAAAGTCTAATATCTCTTATAAATGAGGTCCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAACTTGAATCTGTACCTTTTGATCTTCGAGCTGTACTTGACAACGTTCTCTCACCTTTTTCTGGCAAATCTAATGAAAAGCGGATTGAACTTGCTGTTTATGTCTCTTCTCTGGTACCTGAAGTTGTGATTGGTGATCCTAGCCGATTCAGGCAGATAATCACAAATCTTGTCGGAAATTCTATTAAGTTTACTCATAACAAAGGACATATCTTCATCTCAGTGCATCTGGCAGATGAAGTTTTGGGTCCACTTGATGATATGGATAAAGTTCTGAGACAAGGGTTGAGTTTAGTTAAAGACACATCGAGCAATACCTATAATACACTAAGCGGGTTTCCTGTCGTTAATAGATGGAAAAGCTGGAAACTTTTCAAGAATTTTTGCAGGACAGATGCTACTGAGCATTCAGATATGATCAAATTATTGGTTACTGTTGAGGATACAGGTGTTGGGATTGCTCTGAACGCTCAAAGCCGAATCTTCACACCTTTCATGCAGGCCGATAGTTCTACATCGAGGACTTATGGTGGGACTGGAATAGGATTAAGCATTAGCAAATGTCTTGTGGCTCTCATGGATGGAGAGATTGGCTTTGTAAGTGAACCAGGAACTGGAAGTACGTTTTCATTCACGGGGTCTTTTAGAAGAGGGGAAAGTAGTTCCCTTGAAGCAAAAAGGCAGCAGTATGATCCAGTTGTGACGGAATTTCGAGGGCAGAAGGCCTTGATAATAGATAATAGCAGTTTACGAGCCGAGGTTACCAAATATTATCTTCATAGATTGGGGATCTCTGTCGATATTGCTTTCAGTTTCGGATGCATCTACCAATATCTTTCTAATACCAACAGTGTGTCAAGTGATTTGGCAATGGTACTTATTGACAAAGATGTATGGGACAAAGAAGGGGGTCTGAAATTCCATCAAAGTCTAAAAGAGCGTGTAGAAAACAGCGAAGAAGAAGCTCGGAAAAGCATTCCGAAGATTTTTCTGTTGGCTACATCTATCAGTCCCAATGAGCGAAACAAGCTAAGGTCGGCAGGACTTCTAAATAACGTAATGATGAAGCCTCTACGATTAAGTGTCATGATCGGTTGCTTCCAAGAGGCGTTGGGAGGCGGTAAGAAGAGACAAATAAATAGAAAGAAACCATCTACACTTGGGACCTTACTTAAAAGAAAGAACATTTTGGTGGTGGATGATAATGTAGTCAACAGAAGAGTTGCAGAAGGTGCTCTGAAGAAATATGGAGCGATTGTCACCTGCGTGGAAAGCGGCCGAGGTGCACTTTCCATGCTTAAACCACCCCACAAATTCGACGCATGTTTTATGGATCTTCAGATGCCAGAGATGGATGGCTTTGAAGCAACAAGGCAAATCCGACGATTGGAAAGAGAGGCTAACGATAAAATTGCATCCGGAGAAGCATCGGTTGAGATGTTCGGAAATGTGTCCCATTGGTACACACCAATAGTGGCTATGACTGCAGATGTAATTCAAGCTACAAATGAAGAGTGTAAGAAGTGTGGGATGAATGATTACATATCAAAGCCGTTCGCCGAAGAACAACTTTATGCAGCCGTTTCACATTTCTTTGAGTCTGGCTGA 3834 41.55 MSCSSGAKSLLKLSKLFVKIQRWLLMGMAQNCKFCVSCGKVSAGFRLKKAKENGNVLSSITGWKRKVLVLCAVGLVFIFSICFFWSSFDGSWTSKQKPLSSFGGKTETFLQHFNVSNNHLLFLSSLFAKSDQIVSFQCTKGSSPDMHIKNGISCALKVLSSEELLVRHDQLIEEHLETNDQCPILGEKIPNYFDQSLSHNKRMLASDSLISSKPTDIHSFGKKILQTRGFPSCAKDCCKSLCTLVKGSLWVIFGVIIYQMIPCFDLKLWWIQNELVDQNILQQPVANQVLSQQKQQKVFPQQVQPHHAKNPPKGAGKWWKKLLLLFVVVGVITSIWLFWDLNSKINLRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAMDQKIFGEYTERTAFERPLTSGVAYALRVNHLERDIFEKTHGWTIKKMETEDQTLVRDCIPENLDPAPIQKEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNKELPPNATPDQRVEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNDSSPIKMYGPDFTDTGLLQVSNLDFGDPQRKHEIHCRFKQKPTLPWTAIYASVGVLVITLLVGHIFHAGICRIAEVENEYRKMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTDLDEEQLDYAYTAHDSGESLISLINEVLDQAKIESGRLELESVPFDLRAVLDNVLSPFSGKSNEKRIELAVYVSSLVPEVVIGDPSRFRQIITNLVGNSIKFTHNKGHIFISVHLADEVLGPLDDMDKVLRQGLSLVKDTSSNTYNTLSGFPVVNRWKSWKLFKNFCRTDATEHSDMIKLLVTVEDTGVGIALNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVALMDGEIGFVSEPGTGSTFSFTGSFRRGESSSLEAKRQQYDPVVTEFRGQKALIIDNSSLRAEVTKYYLHRLGISVDIAFSFGCIYQYLSNTNSVSSDLAMVLIDKDVWDKEGGLKFHQSLKERVENSEEEARKSIPKIFLLATSISPNERNKLRSAGLLNNVMMKPLRLSVMIGCFQEALGGGKKRQINRKKPSTLGTLLKRKNILVVDDNVVNRRVAEGALKKYGAIVTCVESGRGALSMLKPPHKFDACFMDLQMPEMDGFEATRQIRRLEREANDKIASGEASVEMFGNVSHWYTPIVAMTADVIQATNEECKKCGMNDYISKPFAEEQLYAAVSHFFESG 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55200405 55207844 + Bma016143.1 Bma02g01307 78557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01307 1277 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 662 741 IPR036097 GO:0000155|GO:0007165
Bma02g01307 1277 ProSiteProfiles Response regulatory domain profile. 983 1113 IPR001789 GO:0000160
Bma02g01307 1277 Pfam Response regulator receiver domain 1138 1270 IPR001789 GO:0000160
Bma02g01307 1277 SMART CHASE_2 390 589 IPR006189 -
Bma02g01307 1277 Coils Coil 652 672 - -
Bma02g01307 1277 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 787 954 IPR003594 -
Bma02g01307 1277 CDD HATPase_EvgS-ArcB-TorS-like 792 954 - -
Bma02g01307 1277 CDD HisKA 675 736 IPR003661 GO:0000155|GO:0007165
Bma02g01307 1277 Gene3D - 650 738 - -
Bma02g01307 1277 Gene3D CHASE domain 394 621 IPR042240 -
Bma02g01307 1277 Gene3D - 739 959 IPR036890 -
Bma02g01307 1277 PRINTS Bacterial sensor protein C-terminal signature 943 956 IPR004358 GO:0016310|GO:0016772
Bma02g01307 1277 PRINTS Bacterial sensor protein C-terminal signature 919 937 IPR004358 GO:0016310|GO:0016772
Bma02g01307 1277 PRINTS Bacterial sensor protein C-terminal signature 884 898 IPR004358 GO:0016310|GO:0016772
Bma02g01307 1277 PRINTS Bacterial sensor protein C-terminal signature 902 912 IPR004358 GO:0016310|GO:0016772
Bma02g01307 1277 Pfam CHASE domain 393 587 IPR006189 -
Bma02g01307 1277 PANTHER TWO-COMPONENT HISTIDINE KINASE 307 1276 - -
Bma02g01307 1277 SUPERFAMILY CheY-like 1134 1274 IPR011006 -
Bma02g01307 1277 ProSiteProfiles Histidine kinase domain profile. 682 959 IPR005467 -
Bma02g01307 1277 ProSiteProfiles CHASE domain profile. 390 614 IPR006189 -
Bma02g01307 1277 Gene3D - 341 393 - -
Bma02g01307 1277 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 729 954 IPR036890 -
Bma02g01307 1277 Gene3D - 1131 1276 - -
Bma02g01307 1277 Gene3D - 976 1115 - -
Bma02g01307 1277 CDD REC_hyHK_CKI1_RcsC-like 1138 1270 - -
Bma02g01307 1277 SMART HKATPase_4 787 959 IPR003594 -
Bma02g01307 1277 SMART HisKA_10 675 740 IPR003661 GO:0000155|GO:0007165
Bma02g01307 1277 PANTHER HISTIDINE KINASE 2 307 1276 - -
Bma02g01307 1277 SUPERFAMILY CheY-like 978 1114 IPR011006 -
Bma02g01307 1277 ProSiteProfiles Response regulatory domain profile. 1137 1274 IPR001789 GO:0000160
Bma02g01307 1277 Pfam His Kinase A (phospho-acceptor) domain 675 740 IPR003661 GO:0000155|GO:0007165
Bma02g01307 1277 SMART REC_2 1136 1270 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01307 Bma-Chr2:55200405 Bma04g00854 Bma-Chr4:10775691 0 dispersed
Bma14g01230 Bma-Chr14:19681449 Bma02g01307 Bma-Chr2:55200405 5.60E-08 transposed
Bma12g00867 Bma-Chr12:39647127 Bma02g01307 Bma-Chr2:55200405 7.42E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56931 PF03924 CHASE 4.30E-32 CL0165 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01307 K14489 - zju:107406671 1612.43