Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01308 ATGTCTAATAGACTGTATTATCAGCCAATGCAAGAAGTAGATTCCTACTGTTTGACTCAGTTTCAGAGTCTAGAGTACCAACTATGCTCGGGTTCTGGGAAAAAAAGGCGACACCTCGAAAGGCAAAATTTTGACAGTTGCTACTCGACTTTGGAATCATCTCAAGCATTTCCATCAAATGTCTCTTTTTCCTCCAATGGAAAACAAAATTCACTGCAAGACTCTCGCTCAAACCCAATCGATAAGCGTTATTCTCTGGAAAATTCCTACGGCTCTCCAATCAGTGGCTCCTGCATAACTGACGATGTCAATGACTTGAGGCACAAATTAATAGAGTTGGAAAACGTAATGCTTGGCCCTGATTTTGATATAGTCGACAGCCATGACAGTATGGGACAAATTATGGATTCGATTTCTCAAGGGGATTTAAGAAAGGTACTCATTTCTTGTGCCAAAGCCGTGTCGGATAATAATTCATTAGTCGCTCAGTGGTTAATGGACGAACTTCGAAAGATGGTGTCGGTTTATGGCGAACCGATGCAAAGGCTAGGTGCATATATGTTAGAGGGGCTGGTTGCTCGACTATCATCCTCCGGTAGTTGTATTTACAATGCTTTGAGGTGTAAAGAGCCTGCCGGAAATGAGCTTCTCTCTTACATGCGTATACTTTACGAGGCCTGCCCCTACTTCAAATTTGGATACTTGTCTGCAAATGGTGCAATTGCAGAAGCCATGAAGGACGAAGACAGATTTCACATCATAGATTTCCGAATAGCTCAGGGAGACCAGTGGATCACCCTCATTCAAGCCTTTGCTGCTCGTCCGGGTGGACCACCCCACATAAAAATAACAGGCATTGATGACTCAATCTCAGCCTATGCCCGAGGAGGAGGACTTCATATCGTCGGGAATCGGCTTTCTAAGTTAGCCAAGGCATTCAAAGTACCATTTGAATTTTGCCCTGCAGCCACATCTGGTACGGAGGTTCAGCTCGAAAATCTGGGGATTCAACCCGGAGAGGCCATTGCGGTGAATTTTGCTTTTATACTTAATCACATGCCTGATGAGAGTGTAAGCACTGAAAATCATAGAGATAGGCTCTTAAGGCTGGTCAAGAGTCTATCTCCAAAAGTAGTGACCCTTGTTGAGCAAGAATCTAACACAAATACTGCAAATTTCTACTCCCGATTCGTCGAGGCTCTCGATTATTACAATACTATGTTCGAGTCTATCGATGCCACTCTTCCGCGGGACCGCAAGGAGAGAATCAACATAGAGCAACACTGCCTGGCGAGGGAAGTGGTTAATATAATAGCGTGCGAGGGGGTGGAGAGAGTCGAAAGGCACGAGCTTCTCGGAAAATGGAGGTCCCGTTTTAGAATGGCCGGATTTTCTCCTTACCCTTTAAGTTCTCTGGTCAATGCAACCATTAAAACTCTGTTGGAGAACTACTGCCATAGATATAGACTTGAAGAAAGGGAAGGGGCTCTCTTTCTTGGGTGGATGAACAGAGATCTGGTTGCTTCTTGTGCATGGAAATGA 1542 44.55 MSNRLYYQPMQEVDSYCLTQFQSLEYQLCSGSGKKRRHLERQNFDSCYSTLESSQAFPSNVSFSSNGKQNSLQDSRSNPIDKRYSLENSYGSPISGSCITDDVNDLRHKLIELENVMLGPDFDIVDSHDSMGQIMDSISQGDLRKVLISCAKAVSDNNSLVAQWLMDELRKMVSVYGEPMQRLGAYMLEGLVARLSSSGSCIYNALRCKEPAGNELLSYMRILYEACPYFKFGYLSANGAIAEAMKDEDRFHIIDFRIAQGDQWITLIQAFAARPGGPPHIKITGIDDSISAYARGGGLHIVGNRLSKLAKAFKVPFEFCPAATSGTEVQLENLGIQPGEAIAVNFAFILNHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTANFYSRFVEALDYYNTMFESIDATLPRDRKERINIEQHCLAREVVNIIACEGVERVERHELLGKWRSRFRMAGFSPYPLSSLVNATIKTLLENYCHRYRLEEREGALFLGWMNRDLVASCAWK 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55213484 55215112 + Bma016144.1 Bma02g01308 78558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01308 513 MobiDBLite consensus disorder prediction 60 84 - -
Bma02g01308 513 ProSiteProfiles GRAS family profile. 134 513 IPR005202 -
Bma02g01308 513 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 513 IPR005202 -
Bma02g01308 513 Pfam GRAS domain family 143 513 IPR005202 -
Bma02g01308 513 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 10 513 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01308 Bma12g00842 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01308 Bma-Chr2:55213484 Bma11g00034 Bma-Chr11:534874 0 dispersed
Bma04g00970 Bma-Chr4:15418176 Bma02g01308 Bma-Chr2:55213484 2.99E-33 dispersed
Bma08g00294 Bma-Chr8:4063798 Bma02g01308 Bma-Chr2:55213484 2.57E-69 dispersed
Bma12g01111 Bma-Chr12:43376408 Bma02g01308 Bma-Chr2:55213484 5.28E-69 dispersed
Bma01g02109 Bma-Chr1:77250880 Bma02g01308 Bma-Chr2:55213484 1.53E-141 transposed
Bma03g01138 Bma-Chr3:15148342 Bma02g01308 Bma-Chr2:55213484 5.78E-28 transposed
Bma05g00091 Bma-Chr5:2970523 Bma02g01308 Bma-Chr2:55213484 2.59E-38 transposed
Bma13g01108 Bma-Chr13:44033288 Bma02g01308 Bma-Chr2:55213484 0 transposed
Bma14g00364 Bma-Chr14:4406307 Bma02g01308 Bma-Chr2:55213484 2.01E-170 transposed
Bma12g00842 Bma-Chr12:38829958 Bma02g01308 Bma-Chr2:55213484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56932 PF03514 GRAS 1.30E-133 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01308 - - tcc:18612432 775.778