Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01322 ATGATGAGAATTGACGACCATCCGGCTGCTGGGTCCGGTTTTAGCAGCTTTTCGAAGCAGAAATACGCCAAAAAGCCTGACCCCAACGCACCCAAAATCACCAGGCCTTGTACCGAATGTGGGAAAGAGTTTTGGTCGTGGAAAGCGCTTTTTGGCCACATGAGGTGCCATCCTGAACGGCAATGGCGAGGTATAAACCCACCGCCGAATCTCCGGCCGCCAAATATCTACCCCTTTAGCGATTTGGAATCTATGACAGAAGAAGAAAAGGAGGTTGCTGCGTGTTTACTTCTACTAGCAACGACTCCAACCGCCATTGACGACTGCGCCGACCCGTCTTGCCGATTGTTCGAGTGCTCGAGTTGCAAGAAAGTGTTCGGATCACACCAGGCTCTGGGCGGCCACAGAGCGACTCACAAGAACGTGAAAGGCTGCTTCGCCATAACGAGAAATGGTTCGGAGCCCGAAGACGATCAGATGGGCGAACGAGAGAGGGATACATCTGCGGAGGAGAAGACGGCGGTGGCGTTCAGCCCAGGTGGACACAGGTGCAGTATTTGTACGAGGGTTTTCTCGAGTGGGCAAGCACTAGGTGGGCATAAGAGATGCCACTGGGAGAATAGCGAGGATCCGCCATTGGTGAGCCCTTTTGTTCCTTCTTCTGCAAGAGAAGGTTGTAGACATTTGGATTTGAATTTGCCTCCGCCATTGGAGGATGATTACTCCTCATCTTCTCATTCTTCTGGCCTAACTCTGGATTTAAGGTTGGGTCCTATGAAGGATTTGCTACATTCTAAGTTAGCTTGTGGTGCGGCATTGACTTGTACTTATGTGTGTGCGTGTACACACACACACATATTTATATACACATACACGATATATGTCATTTACTGTGGTGTGTGTAGATGA 909 49.94 MMRIDDHPAAGSGFSSFSKQKYAKKPDPNAPKITRPCTECGKEFWSWKALFGHMRCHPERQWRGINPPPNLRPPNIYPFSDLESMTEEEKEVAACLLLLATTPTAIDDCADPSCRLFECSSCKKVFGSHQALGGHRATHKNVKGCFAITRNGSEPEDDQMGERERDTSAEEKTAVAFSPGGHRCSICTRVFSSGQALGGHKRCHWENSEDPPLVSPFVPSSAREGCRHLDLNLPPPLEDDYSSSSHSSGLTLDLRLGPMKDLLHSKLACGAALTCTYVCACTHTHIFIYTYTIYVIYCGVCR 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55724639 55725640 - Bma016160.1 Bma02g01322 78572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01322 302 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Bma02g01322 302 MobiDBLite consensus disorder prediction 1 30 - -
Bma02g01322 302 SUPERFAMILY beta-beta-alpha zinc fingers 36 139 IPR036236 -
Bma02g01322 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Bma02g01322 302 Gene3D Classic Zinc Finger 115 204 - -
Bma02g01322 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Bma02g01322 302 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 257 - -
Bma02g01322 302 SUPERFAMILY beta-beta-alpha zinc fingers 181 207 IPR036236 -
Bma02g01322 302 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 257 - -
Bma02g01322 302 MobiDBLite consensus disorder prediction 149 169 - -
Bma02g01322 302 MobiDBLite consensus disorder prediction 155 169 - -
Bma02g01322 302 Pfam C2H2-type zinc finger 36 59 - -
Bma02g01322 302 Pfam C2H2-type zinc finger 182 206 - -
Bma02g01322 302 Pfam C2H2-type zinc finger 117 140 - -
Bma02g01322 302 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Bma02g01322 302 SMART c2h2final6 117 139 IPR013087 -
Bma02g01322 302 SMART c2h2final6 35 57 IPR013087 -
Bma02g01322 302 SMART c2h2final6 182 204 IPR013087 -
Bma02g01322 302 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Bma02g01322 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01020 Bma-Chr2:51565280 Bma02g01322 Bma-Chr2:55724639 3.90E-30 dispersed
Bma02g01322 Bma-Chr2:55724639 Bma03g00845 Bma-Chr3:8086824 2.10E-06 dispersed
Bma13g01144 Bma-Chr13:44625807 Bma02g01322 Bma-Chr2:55724639 3.66E-16 transposed
Bma12g00878 Bma-Chr12:39990988 Bma02g01322 Bma-Chr2:55724639 8.08E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56934 PF13912 zf-C2H2_6 3.60E-11 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01322 - - jre:108997351 271.552