Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01348 ATGGGGAGAGCTCCTTGCTGTGTTAAAAATGGACTGAAGAAAGGGCCTTGGACCACTGAAGAGGACCGTTTGCTCGTAAGCTATATTCAGACTCATGGACCGGGCAACTGGCGTACTCTTCCAAAAAATGCTGGGCTTGAAAGATGTGGAAAGAGTTGTCGTCTCCGATGGACTAACTATCTCAGACCTGATATCAAAAGAGGAAGATTTTCATTCGAAGAAGAAGAGACGATAATTCAACTCCATAGCATGCTGGGAAACAAATGGTCGGAAATAGCTTCTCGTTTGCCGGGGAGGACCGATAATGAAATCAAGAATTACTGGAATACTCATATAAAGAAGAGACTTCTGAAAATGGGAATCGATCCAGTCACTCATGCTCCTAAGCTCGATCTTCACGACCTATCTTCCATCCTCAACGCAGCCTTCTGCAATCAGCTTTCTCTTCTCAACCTCTCAAACTTAGTCGGAAACCAGCCGACCGCCATAACTTTGGAACTTCTAAGACTATCCTCAATCCTATCCAGATCCAAACAACATGACCCATCTTCTTCCTTTCCCAAAAATTTCCAAGAAAATCACCAACTTTTGATGAATTCTGATCAACAACACCAGCTGGAAAATGGGTATTATCAGACGCCTGTACAAGATGCTTTCTCGCTGGAGATGAAACAACAGCTTATGCAAGAGAATTTGGAAGTTCTCTCTTCGTCTACTTCATCGCCGTCGTTGAATTACTATAGCTATCCGAATTCAGATCAAAATCTAGTTCCTTCGGAGTTGTCGAATTTTTTCGCAAACCAACCGAATGTTGCGTGTACCAGTAGTTATTCTGATCACATGACGTCTCATTTGCCGGAAAACTTGAATCTCCAGTCTCTGAATTACATCAACCAGAATTCAACTCCGTTGACTTCATCGTCTACCTATATCAACAGTACCAGCACCGAGGATGAAAAGGAAAGCTACTGCAGCAGCTTGTTCGACTTTGAAATTCCAGAGAGTTTGGACATAGCTGATTTTCTGTAA 1029 42.76 MGRAPCCVKNGLKKGPWTTEEDRLLVSYIQTHGPGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSMLGNKWSEIASRLPGRTDNEIKNYWNTHIKKRLLKMGIDPVTHAPKLDLHDLSSILNAAFCNQLSLLNLSNLVGNQPTAITLELLRLSSILSRSKQHDPSSSFPKNFQENHQLLMNSDQQHQLENGYYQTPVQDAFSLEMKQQLMQENLEVLSSSTSSPSLNYYSYPNSDQNLVPSELSNFFANQPNVACTSSYSDHMTSHLPENLNLQSLNYINQNSTPLTSSSTYINSTSTEDEKESYCSSLFDFEIPESLDIADFL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55940405 55941597 - Bma016192.1 Bma02g01348 78598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01348 342 CDD SANT 69 112 IPR001005 -
Bma02g01348 342 CDD SANT 16 61 IPR001005 -
Bma02g01348 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bma02g01348 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bma02g01348 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bma02g01348 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bma02g01348 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bma02g01348 342 SMART sant 66 114 IPR001005 -
Bma02g01348 342 SMART sant 13 63 IPR001005 -
Bma02g01348 342 Gene3D - 13 66 - -
Bma02g01348 342 PANTHER TRANSCRIPTION FACTOR MYB41 1 337 - -
Bma02g01348 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 337 - -
Bma02g01348 342 Gene3D - 69 116 - -
Bma02g01348 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bma02g01348 342 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01348 Bma08g00624 CCT
Bma02g01348 Bma03g01315 CCT
Bma02g01348 Bma08g00624 ECH
Bma02g01348 Bma03g01315 ECH
Bma02g01348 Bma12g00764 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01348 Bma-Chr2:55940405 Bma11g00368 Bma-Chr11:3965121 8.80E-96 dispersed
Bma08g00635 Bma-Chr8:40210701 Bma02g01348 Bma-Chr2:55940405 8.92E-49 dispersed
Bma09g00593 Bma-Chr9:43101667 Bma02g01348 Bma-Chr2:55940405 1.58E-62 dispersed
Bma10g00552 Bma-Chr10:6671703 Bma02g01348 Bma-Chr2:55940405 1.29E-43 dispersed
Bma15g00642 Bma-Chr15:9230011 Bma02g01348 Bma-Chr2:55940405 2.95E-66 dispersed
Bma02g01345 Bma-Chr2:55916975 Bma02g01348 Bma-Chr2:55940405 6.16E-53 proximal
Bma12g00764 Bma-Chr12:34683851 Bma02g01348 Bma-Chr2:55940405 1.44E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56942 PF00249 Myb_DNA-binding 2.60E-14 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01348 K09422 - qsu:112033181 367.081