Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g01371 ATGCAGCCACTCCGTAGCTATGGTGTTTGCTTTGAGCTTTTTGGATTTTGGTTTTGTTTACTGGTTGTGAGTCTTAAATGCTCCGTCGCTTTAGCTCAGCTCCGGCACGCCGTCGCTGACCCGCATTGGACATATGCGACGGCCACTTGGTATGGCAGCCCCCAAGGCGACGGTAGCGACGGCGGAGCTTGTGGGTATGGAAATTTGGTGGACGTGAAGCCATTAAAGGCTAGAGTGGGAGCAGTAAGTCCTGTGTTGTTTAAAAATGGCGAAGGCTGTGGCGCCTGCTACAAGGTCAGGTGCATAGATAGAAGCATGTGTTCGAGAAGAGCCGTTACAGTAATTGTCACCGACGAATGCCCCGGTGGCTACTGCGCCAATGGAAATACCCACTTTGATCTCAGCGGCGCTGCGTTTGGCCGTATGGCTGTGGCTGGGGAAGGTAATCAGCTTAGGAACCGAGGGGAAATTCCGGTCGTCTACCGCCGAACTCCATGCACATATCCAGGAAAGAACATTGCCTTTCATGTTAATGAAGGTTCAACTGAATATTGGCTTTCACTCCTGGTTGAGTTCGAGGGTGGAGATGGTGATATTGGATCAATGCATATAAAAGAAGCAGGTTCGAGTGAATGGGTACCGATGAAACATATATGGGGAGCCACCTGGTGCATAATTAGGGGGCCATTAAGAGGGCCATTTTCAGTGAAGCTAACGACGTTATTAACAGGAAGAACTCTGTCTGCTAGAGATGTAATTCCAAGGAACTGGACTCCTAAAGCAACTTATTCCTCTCGCCTTAATTTCTACTAA 813 49.08 MQPLRSYGVCFELFGFWFCLLVVSLKCSVALAQLRHAVADPHWTYATATWYGSPQGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFKNGEGCGACYKVRCIDRSMCSRRAVTVIVTDECPGGYCANGNTHFDLSGAAFGRMAVAGEGNQLRNRGEIPVVYRRTPCTYPGKNIAFHVNEGSTEYWLSLLVEFEGGDGDIGSMHIKEAGSSEWVPMKHIWGATWCIIRGPLRGPFSVKLTTLLTGRTLSARDVIPRNWTPKATYSSRLNFY 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56088442 56089554 - Bma016214.1 Bma02g01371 78621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g01371 270 PANTHER EXPANSIN-B17 35 269 - -
Bma02g01371 270 SUPERFAMILY PHL pollen allergen 171 265 IPR036749 -
Bma02g01371 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Bma02g01371 270 Gene3D - 27 166 IPR036908 -
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 241 258 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Bma02g01371 270 SUPERFAMILY Barwin-like endoglucanases 33 170 IPR036908 -
Bma02g01371 270 Gene3D - 167 266 IPR036749 -
Bma02g01371 270 SMART dpbb_1 79 161 IPR007112 -
Bma02g01371 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Bma02g01371 270 PANTHER EXPANSIN-B3 35 269 - -
Bma02g01371 270 Pfam Lytic transglycolase 81 161 IPR009009 -
Bma02g01371 270 Pfam Expansin C-terminal domain 173 254 IPR007117 -
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Bma02g01371 270 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01371 Bma08g00575 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01371 Bma-Chr2:56088442 Bma03g00730 Bma-Chr3:6522555 4.04E-144 dispersed
Bma03g00630 Bma-Chr3:5187959 Bma02g01371 Bma-Chr2:56088442 2.22E-27 dispersed
Bma14g00644 Bma-Chr14:6941482 Bma02g01371 Bma-Chr2:56088442 2.77E-27 dispersed
Bma02g01371 Bma-Chr2:56088442 Bma08g00575 Bma-Chr8:34100714 1.12E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g01371 K20628 - jre:109020668 443.351