Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00005 ATGTCTCAGAAGATTCAAACCCACCCTTCTCTTCATTCAATAAAATCATTGCCGGCTAATTATCGAGCAATGGGTTACCAAGTCTCTAACAGCTTCAAAGAGTCCCGAGGTTTGAATGTTGGAAGTGGGAAAATAGGCTCCTTAACTATTCCTGAAAATGGTGCATTAGCGGATGGAGCTGTTGAGAGATTTCAGAACAATGACGACGACTCACCATATTCCGATACTGTGATATCAGTCAAACAAACGCCTGCTTTAGGTGACAGAGATGTTGGTTCTATTGCATTGCCTTCGCTTCCAACTGTTGCATCACATGGTCAATACAAGTGGGATGACACTTCCTCCTACACGACCAAAAAGGTACTTCAATCTTGGTTTCAACTTCCGGATGGTAAGTGGGAGTTGATAAAGCTGTTGTCTGTATCAGGAACTGAATCTGTCATTTTACTGCCTGATGGGAAAGTCTTAAAAATTAAGCCTGAGAGTTTGATGCCGGCAAATCCAGATATTCTTGATGGTATAGATGATCTGATGCAACTTAGTTATTTAAACGAACCATCAGTTCTATACAATCTTCAATGCAGATACAATCAAGATATGATTTATACTAAAGCTGGGCCAGTGCTGGTTGCTATCAATCCCTTTAAGAAAGTCGATTTATATGGAAATGATTACATTGACGCATACAAGACTAAATCCATTGAGAGTCCGCATGTGTATGCCATTACTGATACAGCTATACGTGAAATGATACGAGGTAGCTCATGTTTCTTTCCTGTTTTGATTGGTGAAAGTGGAGCAGGAAAAACTGAAACTGCAAAAATAGCAATGCAATATTTGGCTGCCATTGGTGGTGGAAGTGGAATTGAATATGAAGTTTTGAAGACAAATCCAATTTTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCTAGTCGCTTTGGAAAATTGATTGAAATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCGAACATTCAGACGGTTGTTCAATGCATGAAGAATGAAAGGTCATATCATATATTTTATCAGCTCTGTGCTGGAGCTCCTCCTGCTCTGAGAGAGACTCTAAACTTAAAGAGTGCTCACGAGTACAAATATCTGAGCCAGAGTGAATGTTATTCAATTGCTGGGGTCAATGATGCAGATCAATTCCGAATTGTTATGGAAGCTCTTGATATTGTTCACATCAGCAAGGAGGACCAGCAGAGTGTGTTTGCCATGATTGCTGCCGTGTTATGGCTCGGAAACGTTACATTTTTTGTGATAGACAATGAGAACCACGTTGAAGCCGTAGCTGATGAAGGTCTATTTACTACTGCTAAATTGATTGAATGTAACCTTGAAGAGCTAAATCTGGCTTTATCTACTCGGAATATGAGAGTTGGGAATGATAATATTATCCAGAAGTTAACACTATCACAAGTAAGAGGGAATCTAAGAAATTCCGTGCTTGTAGCCAAGATAAGTTGTTTGCAGGGATTCTTATATGTTATTCACTTGCAGGCAATTGATGCCAGAGATGCTTTGGCTAAGTCAATTTATGCATGTCTGTTTGAATGGATAGTTGAACAAATCAACAAATCTCTTGTCGTAGGCAAACGCCGGACCGGCAGATCCATTAGTATTCTGGATATCTATGGCTTTGAGTCGTTTGATCGTAATAGCTTTGAACAGTTCTGCATAAATTACGCCAATGAGCGACTCCAACAACATTTCAATCGTCATCTGTTCAAGCTAGAGCAAGAAGAATATATCCAAGATGGGATTGACTGGACAAAAGTTGATTTTGATGACAACCAAGATTGTCTTAGCCTATTTGAAAAGAAACCCTTGGGTTTATTGTCCCTGTTAGATGAAGAGTCCACTTTTCCAAATGGATCAGATTTGACCTTTGCTAACAAGCTGAAGCAGCATCTGAATTCTAATTCTTGCTTTAGAGGAGAACGAGGCAAAGCCTTTACGGTTTGTCATTATGCAGGGGAGGTTATGTATGACACAACTGGATTTTTGGAGAAAAACAGGGACTTATTGCACCTAAATTCCATTAAGCTTCTGTCCTCTTGTTCACTTGAACTTCCTCAAATATTTGCATCTAGCTTGCTTAATCAATCGGAGAAGCCAGTGGTTGGTCCTTTACATAAATCAGGTGGTGCTGACTCTCAGAAATTAAGTGTGGCAACTAAGTTTAAGGCCCAATTGTTTCAATTGATGCAACGACTTGAGAATACCACTCCACATTTCATACGCTGTATCAAGCCAAACAACCTTCAGTGTCCTGGATTGTACGAGCAAGGACTTGTACTGCAGCAATTGAGATGTTGTGGAGTCCTAGAAGTAGTTAGAATATCGCGATCTGGTTTCCCTACCAGGATGTCGCACGAAAAGTTTGCTAGAAGGTATGGTTTTCTTCTACTGGAGAGCGTTGCATCTCAGGATCCACTAACTGTTTCTGTTGCGATTCTTCATCAGTTTAATATATTACCTGAAATGTACCAAGTTGGGTATACAAAACTGTTTTTCCGAACCGGACAGATTGGAGTGCTTGAAGATACTAGAAATCGCACCTTACACGGTGTCTTACGTGTTCAAAGCTGCTTCAGAGGATACCAAGCTCGTCGAGACCATAAGGAACTTAGGAGAGGAATTATCTCTCTTCAATCATTTATACGTGGAGAGAAAACCAGAGGGGAATTTTCAGTCTTATTACAGACACATAGAGCAGCAGTGATGATTCAGAAGAGAATTAGAGGCTGGATTATTAGAAACCAATTAAAGAAAAAATTTGATGCATCTGTCATAGTTCAATCAGTTATTCGTGGTTGGCTGGTTAGACAATGCTCAGGAAATATAGGATTAATGACACGTGGGGGTGTTAAGGCAAATGAGTCAGACGAGGTGCTCGTGAAGTCGTCATTCCTTGCAGATTTACAGCGCCGTGTCCTCAAGTCTGAGGCAGCCTTTAGAGAGAAAGAAGAAGAGAATGAGATTCTCCAACAACGCCTGCAACAATATGAAAATAGGTGGTCGGAATATGAACTAAAAATGAAGTCAATGGAGGAGGTGTGGCAGAAACAAATGAGATCCCTACAATCCAGCCTTTCCATTGCAAAGAAGAGCTTAGCCCTTGATGATTCCGAGAGGAACTCTGATGCGTCTGTAAATGCAAGTGATGAAAGAGACTATACGTGGGAAACAGGAAGTAATAAGGGACAGGAAAGCAATGGGGTGAGACCTATGAGTGCAGGTTTGAGCGTTATAAGCCGGTTGGCAGAGGAATTTGAGCAAAGGAGTCAAGTGTTTGGGGATGATGCCAAATTCTTGGTGGAAGTGAAATCAGGTCAAGTGGAAGCAAGCCTGGATCCAGATAGGGAGCTGAGGAGGTTAAAGCAGATGTTTGAAGGTTGGAAAAAGGATTATGGGGCGAGACTGCGGGAAACGAAGGTGGTATTAAACAAGCTTGGTAGTGAAAGTGCTGTTGATAGGGTGAAAAAGAAGTGGTGGGGAAGGAGGAACAGCTCAAGGTTTTCT 3561 40.94 MSQKIQTHPSLHSIKSLPANYRAMGYQVSNSFKESRGLNVGSGKIGSLTIPENGALADGAVERFQNNDDDSPYSDTVISVKQTPALGDRDVGSIALPSLPTVASHGQYKWDDTSSYTTKKVLQSWFQLPDGKWELIKLLSVSGTESVILLPDGKVLKIKPESLMPANPDILDGIDDLMQLSYLNEPSVLYNLQCRYNQDMIYTKAGPVLVAINPFKKVDLYGNDYIDAYKTKSIESPHVYAITDTAIREMIRGSSCFFPVLIGESGAGKTETAKIAMQYLAAIGGGSGIEYEVLKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTVVQCMKNERSYHIFYQLCAGAPPALRETLNLKSAHEYKYLSQSECYSIAGVNDADQFRIVMEALDIVHISKEDQQSVFAMIAAVLWLGNVTFFVIDNENHVEAVADEGLFTTAKLIECNLEELNLALSTRNMRVGNDNIIQKLTLSQVRGNLRNSVLVAKISCLQGFLYVIHLQAIDARDALAKSIYACLFEWIVEQINKSLVVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGSDLTFANKLKQHLNSNSCFRGERGKAFTVCHYAGEVMYDTTGFLEKNRDLLHLNSIKLLSSCSLELPQIFASSLLNQSEKPVVGPLHKSGGADSQKLSVATKFKAQLFQLMQRLENTTPHFIRCIKPNNLQCPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHEKFARRYGFLLLESVASQDPLTVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGVLRVQSCFRGYQARRDHKELRRGIISLQSFIRGEKTRGEFSVLLQTHRAAVMIQKRIRGWIIRNQLKKKFDASVIVQSVIRGWLVRQCSGNIGLMTRGGVKANESDEVLVKSSFLADLQRRVLKSEAAFREKEEENEILQQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLALDDSERNSDASVNASDERDYTWETGSNKGQESNGVRPMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEGWKKDYGARLRETKVVLNKLGSESAVDRVKKKWWGRRNSSRFS 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 124838 140299 - Bma030953 Bma03g00005 78678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00005 1187 PRINTS Myosin heavy chain signature 550 578 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PRINTS Myosin heavy chain signature 256 281 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PRINTS Myosin heavy chain signature 202 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PRINTS Myosin heavy chain signature 603 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PRINTS Myosin heavy chain signature 298 325 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 Gene3D - 868 914 - -
Bma03g00005 1187 Gene3D - 915 959 - -
Bma03g00005 1187 Gene3D - 347 403 - -
Bma03g00005 1187 ProSiteProfiles IQ motif profile. 915 942 IPR000048 GO:0005515
Bma03g00005 1187 SMART MYSc_2a 166 865 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 MobiDBLite consensus disorder prediction 1066 1089 - -
Bma03g00005 1187 ProSiteProfiles IQ motif profile. 889 918 IPR000048 GO:0005515
Bma03g00005 1187 Gene3D - 798 865 - -
Bma03g00005 1187 SMART iq_5 865 887 IPR000048 GO:0005515
Bma03g00005 1187 SMART iq_5 914 936 IPR000048 GO:0005515
Bma03g00005 1187 SMART iq_5 937 959 IPR000048 GO:0005515
Bma03g00005 1187 SMART iq_5 888 910 IPR000048 GO:0005515
Bma03g00005 1187 ProSiteProfiles IQ motif profile. 868 895 IPR000048 GO:0005515
Bma03g00005 1187 Gene3D Myosin VI head, motor domain, U50 subdomain 404 539 - -
Bma03g00005 1187 Pfam Myosin head (motor domain) 175 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 ProSiteProfiles Myosin motor domain profile. 172 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 511 1186 - -
Bma03g00005 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 911 IPR027417 -
Bma03g00005 1187 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 504 - -
Bma03g00005 1187 Gene3D - 562 754 - -
Bma03g00005 1187 Coils Coil 984 1032 - -
Bma03g00005 1187 CDD MYSc_Myo8 186 852 IPR036022 -
Bma03g00005 1187 MobiDBLite consensus disorder prediction 1057 1089 - -
Bma03g00005 1187 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 119 168 IPR004009 GO:0003774|GO:0005524|GO:0016459
Bma03g00005 1187 PANTHER MYOSIN 9 504 - -
Bma03g00005 1187 Pfam IQ calmodulin-binding motif 916 936 IPR000048 GO:0005515
Bma03g00005 1187 Pfam IQ calmodulin-binding motif 870 887 IPR000048 GO:0005515
Bma03g00005 1187 Pfam IQ calmodulin-binding motif 941 956 IPR000048 GO:0005515
Bma03g00005 1187 Gene3D Kinesin motor domain 171 797 IPR036961 -
Bma03g00005 1187 PANTHER MYOSIN 511 1186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00005 Bma-Chr3:124838 Bma03g00457 Bma-Chr3:3464598 0 dispersed
Bma03g00005 Bma-Chr3:124838 Bma09g00523 Bma-Chr9:41799897 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00005 - K10357 zju:107421963 1800.02