Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00015 AGAATTTTGGAGGAATCTGTCATGGCTGATGCAAGTCCTAGGACCGATATATCTACTGATGGGGATGCAGACGACAAAATTTTTGATCAGGGCCAGTCTAATGCAAATGTGGCTTCTGATTCCAGTGACAGACCAAACCATAAAAGTGATCAGAAGGTGTTGCATTGCCTTATTAAACATTCAACTACAATCAGTATGGTTGTGATCATATATACCTATTATCTATTACAGACTCTTCGGAGACTTGCACAAAATCGTGAGGCGGCTAGGAAAAGCCGATTGAGGAAAAAAGCTTACGTGCAACAACTAGAAAGTAGTCGATTAAAACTGACTCAGCTCGAGCAAGAGCTTCAGAAAGCACGGCAACAGGGTGTCTTCATATCCAGCTCAGGTGATCAGGCACATTCAATGAGTGGAAATGGGGCCATGGCATTTGACGTCGAATACTCTCGGTGGCTGGAAGAGCAAAATCGTGAAATTAATGAACTTAGATCAGCCGTCAACTCTCATGCTAGTGATATGGAACTGCGTCTCGTCGTAGACGGTGTCTTAGCGCACTATGAGGAGATTTTCAGGCTGAAGGCCGGTGCAGCGAAGGCCGACGTTTTTCATATATTATCTGGCATGTGGAAAACACCTGCGGAGAGATGTTTTATGTGGCTTGGAGGTTTTCGATCATCGGAGCTTTTAAAGGTGAGGGTATGTTGGTCACTTTATGTTGGGGTTGAACAGGCTTGGCTAAAAGAATTGCCGTGGCAGCTTCTGGTTAGTCAGCTGGAGCCTCTTACAGAGCAGCAGGTGGTGCGATTAAGCAAGTTGCAGGAATCCTCACAGCAAGCAGAAGACGCCTTATCACAAGGCATGGATGCATTGCAACAGTCTCTGGCAGAGACGTTGTCGAGTGGATCGCTCAGTTCGTCTGTGAATGTAGCCAACTACATGGGACAAATGGCGGTGGCGATGGGTAAACTTGGCACCCTTGAGGGGTTTATTAACCAGGCAGACAATCTTAGGCAACAAACACTTGAACAAATGCATCGCATTCTGACTACCCGGCAGTCGGCTCGGGCTCTGCTTGCAATACACGATTATTTTTCAAGGCTACGGGCTCTGAGTTCTCTCTGGCTCGCCCGCCCCAAAGAGTAG 1146 46.95 RILEESVMADASPRTDISTDGDADDKIFDQGQSNANVASDSSDRPNHKSDQKVLHCLIKHSTTISMVVIIYTYYLLQTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGVFISSSGDQAHSMSGNGAMAFDVEYSRWLEEQNREINELRSAVNSHASDMELRLVVDGVLAHYEEIFRLKAGAAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKVRVCWSLYVGVEQAWLKELPWQLLVSQLEPLTEQQVVRLSKLQESSQQAEDALSQGMDALQQSLAETLSSGSLSSSVNVANYMGQMAVAMGKLGTLEGFINQADNLRQQTLEQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 219471 221119 + Bma016283.2 Bma03g00015 78688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00015 381 Gene3D - 77 125 - -
Bma03g00015 381 Coils Coil 96 123 - -
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA9 5 58 - -
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA9 253 381 - -
Bma03g00015 381 MobiDBLite consensus disorder prediction 1 48 - -
Bma03g00015 381 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 5 58 - -
Bma03g00015 381 Pfam bZIP transcription factor 76 119 IPR004827 GO:0003700|GO:0006355
Bma03g00015 381 CDD bZIP_HBP1b-like 77 129 - -
Bma03g00015 381 SMART brlzneu 75 136 IPR004827 GO:0003700|GO:0006355
Bma03g00015 381 Pfam Seed dormancy control 160 232 IPR025422 GO:0006351|GO:0043565
Bma03g00015 381 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700|GO:0006355
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA9 77 233 - -
Bma03g00015 381 Coils Coil 153 173 - -
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 77 233 - -
Bma03g00015 381 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 253 381 - -
Bma03g00015 381 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 80 119 IPR004827 GO:0003700|GO:0006355
Bma03g00015 381 ProSiteProfiles DOG1 domain profile. 142 378 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00015 Bma-Chr3:219471 Bma10g00236 Bma-Chr10:2162224 3.10E-165 dispersed
Bma03g00015 Bma-Chr3:219471 Bma03g00419 Bma-Chr3:3186899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56950 PF14144 DOG1 1.10E-30 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00015 K14431 - qsu:112028986 504.597