Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00018 ATGTCCCCTGCCGATCCCCCTCTATCAGCCACCGGCGTCGGTCTCGGTTATGGTATTGCCATAGCCATCAGTATTCTCGTCCTCATCTCCACCATAATGCTTGCTTCCTACGCCTGCGTCAGAGTCAAAGCTACCGCCGCCTATCGCAACAGAAGCGTCCGAGCCACTTCCGATGCCAACAGAGGCGTTACCAACGTGGCCGTCCGGTCCCCCTCGGAGCCGGTGGTGGTGGTGGTGGTGGGCCTGGATAGGCCAATAATCGAGTCGTATCCGAAGGTGGTGTTGGGTGAGAGCCTTCGGTTTCCGACGCCTAACCAGGGGGTTTGCTCCATCTGCTTGGCCGACTACCAACCAAAGGATTGTCTGCGATGCATTCCAGAATGCCATCACTGTTTCCACGCGGATTGCATTGACGAGTGGCTTCGGGTGAGCGGAACGTGTCCTCTGTGTAGAAATTCCCCGGCTCCGTCTCCTCTTGCATCCCCTGTTTCTGAGTTCGTCCCACTGGCTTTCCACGCTAGGTGA 525 57.52 MSPADPPLSATGVGLGYGIAIAISILVLISTIMLASYACVRVKATAAYRNRSVRATSDANRGVTNVAVRSPSEPVVVVVVGLDRPIIESYPKVVLGESLRFPTPNQGVCSICLADYQPKDCLRCIPECHHCFHADCIDEWLRVSGTCPLCRNSPAPSPLASPVSEFVPLAFHAR 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 226201 226725 - Bma016286.1 Bma03g00018 78691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00018 174 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 16 157 - -
Bma03g00018 174 SUPERFAMILY RING/U-box 108 155 - -
Bma03g00018 174 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Bma03g00018 174 Pfam Ring finger domain 109 151 IPR001841 -
Bma03g00018 174 SMART ring_2 109 150 IPR001841 -
Bma03g00018 174 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 157 - -
Bma03g00018 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 156 IPR013083 -
Bma03g00018 174 CDD mRING-H2-C3H2C2D_ZSWM2 109 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00018 Bma-Chr3:226201 Bma03g00394 Bma-Chr3:3006669 6.73E-21 dispersed
Bma01g02016 Bma-Chr1:74750104 Bma03g00018 Bma-Chr3:226201 6.93E-37 transposed
Bma02g01099 Bma-Chr2:52676708 Bma03g00018 Bma-Chr3:226201 8.63E-35 transposed
Bma05g01188 Bma-Chr5:50980454 Bma03g00018 Bma-Chr3:226201 2.50E-37 transposed
Bma12g00608 Bma-Chr12:27411199 Bma03g00018 Bma-Chr3:226201 9.42E-32 transposed
Bma03g00018 Bma-Chr3:226201 Bma08g00903 Bma-Chr8:47930604 3.29E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00018 - - zju:107412735 218.779