Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00023 ATGGGGATTCAAACAATGGGGTCCCAAGGGGAGGGTGATAACAATGGCAAACTTTCACAATTTCAGACGATGGCAAGGCAAAACTCAATGTACAGTCTCACTCTAGACGAGGTTCAAAATCAGTTTGCAAACTTGGGAAAACCACTAAGCAGCATGAACCTTGACGAACTTCTCAAAAATGTGTGGACTGCGGAGGCCAACCAATCATTGAGTGTAGATATTGAGGATAAGACGTTGGCAACTCAAACGGGCTTGCACTGTCAGGGAAGTATTTCACTCACAGGTGCACTGAGTAAGAAGACAGTTGATGAGGTTTGGCAAGACATACAACAAAGCAAAAGCAGCCATATAAAGAAGTCTCGAGATCGACAACCTACTTTGGGAGAGATGACTTTGGAAGACTTTTTGGTCGAGGCAGGAGTTGTGGCAGGAGTCTCACCGGATAAAAAAGTTTCTGGTTCAGTCATGGAAGTTGATTCGAATCTTGGCCCACAATTTTCCCAGCAAGGTCAATGGATGCAACACCCACAATCAAAGTATCAGCATCCTCAGCAAGCAGTGATGGGGGTTTATATGCCCGGCCAGCCTATTCCGCAGGCAAATCATGTAGGTGCGAGTGCTGTAATGGATATTCCTTTTTCAGATAACCAGATGACAGTGCCTCCTCCTTTGATGGGAGCATTATCCGACACACAAACACCTAGAAGGAAAAGGGGCCTTCCAGAGGACATGGTTGTGAAGACTGTCGAGAGTAGGCAAAAGAGGATGATAAAGAACAGGGAGTCTGCTGCACGTTCACGAGCAAGGAAGCAGGCTTACACCAATGAACTGGAGAATAAAGTTTCGCGCCTTGAAGAGGAAAATGAAAGGCTCAGGAAAATAAAGGTTTGGCTTCCTTTACTATCTTATGCGAAATTCGCGCTCCCACTTGCTTTACCCTTCTCCTCGATTCCTGCAATTTCGCTCTCATTTCTCCACTGGCTCCCCCATTCCTTCCTCCTTTCATTTGGGAATTTTGTATCTGTCATTTCCGAATTGGAACTGTACGATACGATGTCCGCTTCTACCGTGTCAATAACGGCAAACCCGGCTTCCCGTCGGAGACCCGTCCTGGCTTCCGAGAGAAAGAGCAATTTTGAAATGGTGGCGCCCGAAGCCGCTTCTCGCGAGGCCAACGGGGTCCTTAGTGCTGGCGATGATAAGGTTACTGCTTCTAATGCCAAGGATCTGAGCAATCACTCCATTAGGGGTGACCCTGTTCTCGATCGCTCTTCCAGGGATTTGCTTCAACTCAAGAAAACCGTCGCCACTACCACCATCTCCCCTCGACGCACTCGCAAAGTCCTCACCAAGCCTGACAAGCCTCGCTGGATGACCATTCTAAGCGTCTTTGTAAAAAACTTTCTTCTTTTGATTGTCATTTTGGGTTTGGTTCAGATGATTTGGAGGTTAGCTTTGAAGTCTGGCCACAGCAACGTCGATTCACAGTTGGGATTGTCCGAATTCGAAGGCCGGATTGCTGAAGTAGAAGCTTTCTTGAAGACAACTACTAAAATGATACAGGTACAGGTTGATGTCGTCGATCGTAAAATCGAGAATGAGATTGGAGGATTGAGAAGGGAAGTGACCAAGAAAATTGAAGATAAACAAGCGGTTTTTGGTAGTGATTTGAAGCGGCTGGAGGCCAAAAGTGAAGATTTGGAGAGGTCTTTGGGTCAGTTGAACTCTGTGGATTGGTTATCGAAGCAAGAGTTTGAAAAAATTTACGAGGGCTTGATAAAGGAAAAGAACGGTGAATATAGTGCTGGATCTACCACCAGTTTGGATGATTTAAGAGCTTATGCCAAAGAGATGGTTGAGAGGGAGATCGAAAAGCATGCTGCTGATGGAGTTGGGAGGGTGGATTATGCACTGGCCTCTGCTGGTGCTATGTGTTTCCCCTTGAAAGGCAGCGCTGGATTTGTACATATTAGGCTGCGAGCTGCAATCATTCCGGAGGCTATTACTTTGGAGCACGTTGCCAAGAGTGTTGCTTACGATAGATCAAGTGCTCCAAAGGACTGCAGGGTGTCCGGATGGCTTCATGACCATAGTATTGGTTCGGAAGTGAATGCCGAGAAAATGATCCTACTTGGGGAGTTTAGTTACGACCTCGAGAAGAGCAATGCTCAGAAGTTTGAGGTGGTCGAAGCAGCTACCTCCGTTGTGGTTGACACGCTCAGATTTGAATTCTATTCGAACCATGGAAGCCCTTCTCACACGTGCATCTATCGATTGAGGGTGCATGGCCACGAACCCGTTTCGGTTTTGACGACGACAATGGAATATTGA 2331 46.76 MGIQTMGSQGEGDNNGKLSQFQTMARQNSMYSLTLDEVQNQFANLGKPLSSMNLDELLKNVWTAEANQSLSVDIEDKTLATQTGLHCQGSISLTGALSKKTVDEVWQDIQQSKSSHIKKSRDRQPTLGEMTLEDFLVEAGVVAGVSPDKKVSGSVMEVDSNLGPQFSQQGQWMQHPQSKYQHPQQAVMGVYMPGQPIPQANHVGASAVMDIPFSDNQMTVPPPLMGALSDTQTPRRKRGLPEDMVVKTVESRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKIKVWLPLLSYAKFALPLALPFSSIPAISLSFLHWLPHSFLLSFGNFVSVISELELYDTMSASTVSITANPASRRRPVLASERKSNFEMVAPEAASREANGVLSAGDDKVTASNAKDLSNHSIRGDPVLDRSSRDLLQLKKTVATTTISPRRTRKVLTKPDKPRWMTILSVFVKNFLLLIVILGLVQMIWRLALKSGHSNVDSQLGLSEFEGRIAEVEAFLKTTTKMIQVQVDVVDRKIENEIGGLRREVTKKIEDKQAVFGSDLKRLEAKSEDLERSLGQLNSVDWLSKQEFEKIYEGLIKEKNGEYSAGSTTSLDDLRAYAKEMVEREIEKHAADGVGRVDYALASAGAMCFPLKGSAGFVHIRLRAAIIPEAITLEHVAKSVAYDRSSAPKDCRVSGWLHDHSIGSEVNAEKMILLGEFSYDLEKSNAQKFEVVEAATSVVVDTLRFEFYSNHGSPSHTCIYRLRVHGHEPVSVLTTTMEY 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 270350 274742 + Bma016292.1 Bma03g00023 78696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00023 776 PANTHER SAD1/UNC-84-LIKE PROTEIN-RELATED 644 769 IPR045119 GO:0005639
Bma03g00023 776 PANTHER SAD1/UNC-84-LIKE PROTEIN-RELATED 355 643 IPR045119 GO:0005639
Bma03g00023 776 SMART brlzneu 247 310 IPR004827 GO:0003700|GO:0006355
Bma03g00023 776 CDD bZIP_plant_BZIP46 252 293 - -
Bma03g00023 776 Coils Coil 557 577 - -
Bma03g00023 776 Gene3D - 643 765 - -
Bma03g00023 776 PANTHER SUN DOMAIN-CONTAINING PROTEIN 1-LIKE 644 769 - -
Bma03g00023 776 PANTHER SUN DOMAIN-CONTAINING PROTEIN 1-LIKE 355 643 - -
Bma03g00023 776 ProSiteProfiles SUN domain profile. 590 766 IPR012919 -
Bma03g00023 776 Coils Coil 267 294 - -
Bma03g00023 776 Gene3D - 250 296 - -
Bma03g00023 776 Pfam bZIP transcription factor 252 293 IPR004827 GO:0003700|GO:0006355
Bma03g00023 776 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 293 IPR004827 GO:0003700|GO:0006355
Bma03g00023 776 Pfam Sad1 / UNC-like C-terminal 643 764 IPR012919 -
Bma03g00023 776 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Bma03g00023 776 SUPERFAMILY Leucine zipper domain 252 293 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02509 Bma-Chr1:82779991 Bma03g00023 Bma-Chr3:270350 3.02E-12 dispersed
Bma03g00023 Bma-Chr3:270350 Bma08g01188 Bma-Chr8:50771601 2.74E-07 dispersed
Bma03g00023 Bma-Chr3:270350 Bma03g00516 Bma-Chr3:4008581 2.88E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56952 PF07738 Sad1_UNC 1.50E-34 CL0202 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00023 K19347 - csv:101214156 536.569