Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00029 ATGACCCCGAAACGACCTCTCTTGATTCCGTCGCCAAGAACTCCAAACACCTACGACGTTTCTCCCGTACCCACCAACAACGATTTAGTAAAACCCAATTCCGGCGACGTCAGTTCGTTTTCCGTCATGGATTTTGGAAACCCAGTTGATAAAGTTTCAAATTTTGAGCTAAATTACCAGTCTTCCTCCCTTAAAAGCGTTTCCTCGTCACATTCGAAGACATCCGGTGGCAATTCTTTACGGGAAGTTAGTTTTGGGGATATGGGATCAAAACCAGTGCGTTTTGGATCGAGGCGTGCTGATTCTGAAGCTCTTAGCGTGTCCCAGAAGGAGATCAACGATGAAGACGCTAGATTGGTCCACATAAATAATTCTGGGACGACAAATGAGAAGTTTGACTTAGCTAGGAATTCAATTCGTACTGCCAAGTATTCATTGATAACTTTCGTCCCCAGAAATCTTTTTGAACAGTTTCATAGAATTGCTTACATTTATTTTCTCATCATTGCTGTGCTTAATCAACTCCCTCAGCTTGCCGTGTTTGGCCGGGGGGTCTCTATTCTTCCACTGGCCTTTGTACTTCTAGTTACAGCAGTTAAGGATGGTTTTGAGGATTGGAGGAGACACCAATCAGATCGGATAGAAAATAATCGTTTAGCGTCTGTTTTTATTAATGATCAGTTTCAACCAAAGAAGTGGAGGGATATTACAGTTGGTGAAATCATCAAACTTCATGCAAATGAAACAATTCCTTGTGATATGGTTTTGCTCTCTACTAGTGATCCTACTGGCGTCTCATATGTGCAAACTATTAATTTAGACGGAGAATCAAATTTAAAGACAAGATATGCCAAACAAGAGACTTTGTCAAAGATCCCTGAGAAGGAGAAGATTAGTGGGTTGATAAAATGTGAGAAGCCAAACCGGAACATTTATGGATTTCAAGCTAACATGGAAATTGATGGAAAGAGACTCTCCCTTGGACCTTCAAACATTGTTCTTCGGGGATGTGAACTGAAGAACACGAGCTGGGCACTGGGTGTGGCAGTCTATTGTGGCAGTGAGACCAAAGTTATGCTCAATAGCTCTGGAGCTCCTTCTAAGAGGAGTCGGCTCGAGACCCGTATGAATATAGAGATCATCTTGCTCTCACTTTTCCTCATTGCATTGTGTGCTGTTGTCTCAATTTGTGCTGCTGTTTGGTTCATAAGGAAGGGAGATGAATTGAACACATTGCCTTATTTCAGGAAGGAGGACTTTTCAAAGGGAGCAGCTGAAAACTACAACTTCTATGGATGGGGACTAGAGACGTTATTTGTATTCCTCATGTGTGTCATAGTTTTCCAGATTATGATTCCCATTTCATTGTACATTTCTATGGAGCTAGTCCGGGTGGGTCAGGCATATTTCATGATCAATGATTCAGACATGTATGATGAAGCTTCTAATTCGAGATTCCAATGCCGGGCACTGAACATTAATGAAGATTTAGGACAAATTGGATATGTCTTTTCAGACAAAACTGGTACTCTGACTGAGAACAAGATGGAATTTCAAAGTGCAAGCATTTGGGGAGTGGATTACAGAGGAGGCATCCATGCCAGTTCCCATGGATTATTTGACAATTCTGTTCAAGTTGATGGAAAGATTCTAACGCCGAGAATGAGGGTGAAGGTTGATCCTGAGCTTCTACGGTTGGCGAAAACTGGAAAGAACACAAAGAAAGGAAAACACATACATGATTTCTTCCTGGCATTGGCTGCATGTAATACCATAGTTCCTATTATTACTGAGACTGCTGATTCATCCGTGAATTTAATTGATTATCAAGGAGAATCTCCAGATGAACAGGCATTGGTTTATGCTGCAGCTGCCTATGGTTTTGTGCTTATAGAACGAACGTCTGGCCACATAGTAATTGATTTCCAAGGAGAAAGGACAATGTTCAATGTTTTGGGTCTGCATGAATTTGATAGTGACCGGAAGCGAATGTCTGTAATATTGGGTTGCCCTGACAACACCTTTAAGGTTTTTGTGAAGGGCGCGGACACCACTATGTTCAAAGTGATAGATAAATCCTCAAACTGGAAAATTATAAGCACAACTGATGCCCATCTTCACTCTTACTCATCTCTCGGTTTGAGAACACTAGTCGTGGGAATGAAGGAGCTGAGCGGCCCAGAATTCGAGCAATGGCATGTGGCCTTTGAAGAAGCAAGCACTGCTCTGATGGGCAGGGCTTCACTTCTCCGCAAGGTGGCTAGCTATGTAGAGAAAAATCTCAATATACTAGGTGCTTCTGGCATTGAAGATAAGTTGCAAAAAGGTGTTCCAGAGGCGATAGTGTCTTTGAGAACAGCTGGAATTAAAGTTTGGGTTTTGACTGGAGATAAGCAAGAAACTGCCATATCAATTGGTTACTCTTCAAAGCTCCTAACAAGCAGGATGACTCAAATTATCGTCAACAGCAATTCAAAAGAATCATGTAGGCGGAGTTTAGATGATGCTATTGTTATGTCCAAGAAGGTAATGACTGTGACAGAGGTCAGAAATGAAACTAGTGATGGAGTCTCTGCAACTCAAGTGGCTTTGATCATAGATGGTACAAGCCTGGTTTATATTCTGGATAGTGAACTTGAGGAACAGCTATTTGAATTGGCTAGTAATTGCTTAGTGGTGCTATGCTGCCGAGTAGCTCCGTTGCAAAAGGCGGGCATCGTGGCACTTGTCAAGAAACGAACATCCGAGATGACACTTGCCATTGGGGATGGTGCTAATGATGTTTCAATGATCCAAATGGCTGATGTGGGGGTGGGCATCAGTGGGCAGGAGGGTCGACAAGCTGTGATGGCATCAGATTTTGCAATGGGGCAGTTTAGATTCTTGGTTCCTCTGCTATTGGTGCATGGTCATTGGAATTATCAGCGGATGGCTTACATGATTTTGTACAATTTTTACAGAAATGCAGTTTTCGTTCTTATTTTGTTTTGGTATGTATTATTTACCAGTTTCTCTTTGACAACCGCGATAAACGAATGGAGCAGTATGCTATATTCTATAATATATACTTCTCTTCCAACAATTATTGTCGGGGTTCTCGACAAGAACCTGAGCCGAATGACTCTTCTAAAGTACCCTCCACTTTATGGGGCTGGGCATAGACAAGAGAGCTACAACTCAAAACTGTTTTGGTTTACTATGACAGACACTGTGTGGCAAAGTATTGCAGTTTTCTTCATCCCGCTTCTTGCATATTGGGGCAGCACTATTGATGTGTCGAGCATCGGAGATCTTTGGACGCTTGCTATCGTTATACTGGTCAACTTACACTTGGCCATGGATGTTATCCGGTGGAATTGGATTACTCATGCCGCAATTTGGGGATCCATAGTTGCCACTTTCATTTGTGTTTTGATCATTGATGCCATTCCTTCATTTTTCGGTTACTGGGCTATCTTTCATATCGCTGGCACGGCATCCTTCTGGCTCTGCTTGCTTGCTATCATCGTGGCCTCCTTGATTCCTCGTTTCGTCGTGAAAATTCTTTGTCAATATTACAGTCCTAGTGATATTCAGATAGCCAGAGAAGCCGAAAAATATGGAAATCTAAGGGAGGGTGGAGCTGAACAAATTGAATTGCACCCTCTTCAGGGATAA 3657 42.3 MTPKRPLLIPSPRTPNTYDVSPVPTNNDLVKPNSGDVSSFSVMDFGNPVDKVSNFELNYQSSSLKSVSSSHSKTSGGNSLREVSFGDMGSKPVRFGSRRADSEALSVSQKEINDEDARLVHINNSGTTNEKFDLARNSIRTAKYSLITFVPRNLFEQFHRIAYIYFLIIAVLNQLPQLAVFGRGVSILPLAFVLLVTAVKDGFEDWRRHQSDRIENNRLASVFINDQFQPKKWRDITVGEIIKLHANETIPCDMVLLSTSDPTGVSYVQTINLDGESNLKTRYAKQETLSKIPEKEKISGLIKCEKPNRNIYGFQANMEIDGKRLSLGPSNIVLRGCELKNTSWALGVAVYCGSETKVMLNSSGAPSKRSRLETRMNIEIILLSLFLIALCAVVSICAAVWFIRKGDELNTLPYFRKEDFSKGAAENYNFYGWGLETLFVFLMCVIVFQIMIPISLYISMELVRVGQAYFMINDSDMYDEASNSRFQCRALNINEDLGQIGYVFSDKTGTLTENKMEFQSASIWGVDYRGGIHASSHGLFDNSVQVDGKILTPRMRVKVDPELLRLAKTGKNTKKGKHIHDFFLALAACNTIVPIITETADSSVNLIDYQGESPDEQALVYAAAAYGFVLIERTSGHIVIDFQGERTMFNVLGLHEFDSDRKRMSVILGCPDNTFKVFVKGADTTMFKVIDKSSNWKIISTTDAHLHSYSSLGLRTLVVGMKELSGPEFEQWHVAFEEASTALMGRASLLRKVASYVEKNLNILGASGIEDKLQKGVPEAIVSLRTAGIKVWVLTGDKQETAISIGYSSKLLTSRMTQIIVNSNSKESCRRSLDDAIVMSKKVMTVTEVRNETSDGVSATQVALIIDGTSLVYILDSELEEQLFELASNCLVVLCCRVAPLQKAGIVALVKKRTSEMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMAYMILYNFYRNAVFVLILFWYVLFTSFSLTTAINEWSSMLYSIIYTSLPTIIVGVLDKNLSRMTLLKYPPLYGAGHRQESYNSKLFWFTMTDTVWQSIAVFFIPLLAYWGSTIDVSSIGDLWTLAIVILVNLHLAMDVIRWNWITHAAIWGSIVATFICVLIIDAIPSFFGYWAIFHIAGTASFWLCLLAIIVASLIPRFVVKILCQYYSPSDIQIAREAEKYGNLREGGAEQIELHPLQG 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 313319 317912 + Bma016298.1 Bma03g00029 78702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00029 1218 ProSitePatterns E1-E2 ATPases phosphorylation site. 506 512 IPR018303 -
Bma03g00029 1218 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 10 1216 - -
Bma03g00029 1218 SUPERFAMILY Calcium ATPase, transduction domain A 217 359 IPR008250 -
Bma03g00029 1218 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 893 1005 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma03g00029 1218 Gene3D - 196 361 - -
Bma03g00029 1218 Gene3D - 761 961 IPR023214 -
Bma03g00029 1218 Gene3D - 606 746 IPR023299 GO:0000166
Bma03g00029 1218 SFLD p-type atpase 488 972 IPR044492 -
Bma03g00029 1218 SUPERFAMILY HAD-like 499 976 IPR036412 -
Bma03g00029 1218 MobiDBLite consensus disorder prediction 14 32 - -
Bma03g00029 1218 SUPERFAMILY Calcium ATPase, transmembrane domain M 136 1188 IPR023298 -
Bma03g00029 1218 SFLD C1.7: P-type atpase like 488 972 - -
Bma03g00029 1218 PRINTS P-type cation-transporting ATPase superfamily signature 921 940 - -
Bma03g00029 1218 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Bma03g00029 1218 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 136 1196 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Bma03g00029 1218 Pfam Phospholipid-translocating ATPase N-terminal 120 185 IPR032631 -
Bma03g00029 1218 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 777 IPR023299 GO:0000166
Bma03g00029 1218 Pfam Cation transport ATPase (P-type) 612 688 - -
Bma03g00029 1218 MobiDBLite consensus disorder prediction 1 32 - -
Bma03g00029 1218 Pfam Phospholipid-translocating P-type ATPase C-terminal 949 1189 IPR032630 -
Bma03g00029 1218 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 10 1216 - -
Bma03g00029 1218 CDD P-type_ATPase_APLT_Dnf-like 136 1081 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00029 Bma-Chr3:313319 Bma14g01495 Bma-Chr14:30220082 0 dispersed
Bma01g01707 Bma-Chr1:53121903 Bma03g00029 Bma-Chr3:313319 0 transposed
Bma03g00745 Bma-Chr3:6757998 Bma03g00029 Bma-Chr3:313319 1.36E-173 transposed
Bma03g00029 Bma-Chr3:313319 Bma08g01184 Bma-Chr8:50755484 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00029 K14802 - zju:107406555 1890.16