Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00061 ATGATTCCTACTGACTGGATTTTCTTACTATTTCTCTTGACCTGTCTGTGTTCTTCAGCCATGGCTGCCCTCAATCTCACCATTCCTCATCAACACCCTCACCCAGATTTGGTTGCTATGCAAGTTCAAAGAACAATCAATGAATCTGTATGGCGAAGACAAACACTTTCACTTCAAGAAAAAGATCAAACTTACCAGTGTCTCACCGGAAACCCAATCGACGATTGTTGGCGATGCGACTCCAACTGGGAGACGAATCGGCAAAGGCTCGCCGACTGCGGAATCGGATTCGGAAGAGACGCCATGGGGGGCAAGGGCGGCCAATTCTACATCGTCACGGACTCCTCCGATAAGGACCCGGCCAACCCCACCCCCGGCACTCTCCGGCACGCCGTGATCCAAGTGGAACCCCTCTGGATTATCTTCTCCAGAGACATGACTATAAAACTCAAACACGAACTCATCGTAAGCAGTTTCAAAACCATCGATGGCCGGGGAGCGAAAGTCCAGATAACCGGCGGCGGCTGCATTACTCTTCAGTTCATCTCGAACGTAATAATCCACAGCGTCTTCATCCACCATTGCGTACCCACCGGGAATTCAAACATTCGATCGAGTCCAACGCACGTCGGGCACCGTGGCAGATCGGACGGCGACGGAATCTCAATCTACAGCTCGAGAAATATCTGGATCGATCATTGCTCCCTCGCGTACTGTACGGACGGACTTATAGACGCTATAATGGGGTCGACCGGAATCACCATCTCGAACAGCTATTTCTCACACCATAACGAGGTGATGCTTCTGGGGCACGACGATAGGCATGAACCAGACTCCGGTATGCAGGTGACCATCGCCTTCAACCACTTCGGCGAGGCGCTGGTGCAGCGTATGCCCAGGTGTAGACGCGGGTACATACACGTGGTCAACAATGATTTCACGGCGTGGGAGATGTACGCCATAGGAGGTAGTGCCAGTCCGACCATTAATAGCCAAGGGAATCGATACACCGCTCCGCTCGACCCTTACGCCAAGGAGGTGACTAAGCGGGTGGAGACAGACGAGAGAGAGTGGAGCGACTGGAACTGGAGGACGGAGGGGGACATAATGGTGAACGGAGCGTTCTTCGTGCCATCAGGACAAGGCCTGAGCCCTCAGTTCACCAAAGCCTCCAGCGTGGAGCCCAAGTCCGTCGCTCTTATCGACCAACTCACCCTCTACTCCGGCGTGCTTGGAAACCCAGGGTAG 1248 53.53 MIPTDWIFLLFLLTCLCSSAMAALNLTIPHQHPHPDLVAMQVQRTINESVWRRQTLSLQEKDQTYQCLTGNPIDDCWRCDSNWETNRQRLADCGIGFGRDAMGGKGGQFYIVTDSSDKDPANPTPGTLRHAVIQVEPLWIIFSRDMTIKLKHELIVSSFKTIDGRGAKVQITGGGCITLQFISNVIIHSVFIHHCVPTGNSNIRSSPTHVGHRGRSDGDGISIYSSRNIWIDHCSLAYCTDGLIDAIMGSTGITISNSYFSHHNEVMLLGHDDRHEPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRYTAPLDPYAKEVTKRVETDEREWSDWNWRTEGDIMVNGAFFVPSGQGLSPQFTKASSVEPKSVALIDQLTLYSGVLGNPG 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 510136 511638 + Bma016331.1 Bma03g00061 78734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00061 415 SMART amb_all 145 342 IPR002022 -
Bma03g00061 415 PANTHER PECTATE LYASE 8 412 - -
Bma03g00061 415 Pfam Pectate lyase 151 334 IPR002022 -
Bma03g00061 415 SUPERFAMILY Pectin lyase-like 61 389 IPR011050 -
Bma03g00061 415 Gene3D - 70 412 IPR012334 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bma03g00061 415 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bma03g00061 415 PANTHER PECTATE LYASE 18-RELATED 8 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00061 Bma-Chr3:510136 Bma04g00585 Bma-Chr4:5602715 0 dispersed
Bma08g01130 Bma-Chr8:50205174 Bma03g00061 Bma-Chr3:510136 9.48E-49 transposed
Bma15g00907 Bma-Chr15:31479078 Bma03g00061 Bma-Chr3:510136 2.85E-12 transposed
Bma03g00061 Bma-Chr3:510136 Bma03g00362 Bma-Chr3:2697882 0 wgd
Bma03g00061 Bma-Chr3:510136 Bma08g00920 Bma-Chr8:48179296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00061 K01728 - csv:101205739 693.73