Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00079 | ACAATGGATTCCATGAAAGAAGAAAAAGGGAATTTAGATTCTCAACTATGGCATGCTTGTGCTGGTGGAATGGTTCAAATTCCATCCATTGATTCTAAAGTCTTTTATTTTCCTCAAGGCCACGCAGAACAGGCTCGTGGGGACTTGAACTTTGGAAGTCCTAAAATTTCCCCTCTCATTCTCTGCACAGTTTCTGCAGTTCGATTCATGGCGGATTCAGAAACGGACGAGGTGTTTGCTGAGATTACTTTAATTCCTTTGAGAAGTAATGATTTTGATCGTGAAGAAGATGACTGGACTGGGGGAAGTAATCAGAGTGAGAGCGAAGAAAAGCATACTTCCTTTGCTAAAACTTTGACTCAATCCGACGCCAACAATGGCGGTGGATTCTCCGTTCCTCGCTATTGCGCAGAAACGATTTTTCCGCCTTTGGACTACTCGGCGAATCCACCCGTTCAGACAATTCACGCGAAGGATGTTCACGGCCAGATTTGGAAGTTTAGGCATATTTATCGGGGGACTCCTCGCCGCCACCTTTTGACGACTGGTTGGAGTAATTTCGTAAATTGCAAGAAGCTTGTGGCCGGAGATTCAGTCGTGTTCTTGAAATCGGAGAATGGAGAGCTTCAGATCGGAATAAGGAGGGCAAAGAGGGGAATAGGAGGGCGATTTGATTTCTCAATTCCACCATTGGCGACAAATTCAAATGGCGATCCGAGAGGAAAAGTGACTGCTGAATCGATAATCAAAGCAGTAAATCTTGCTTCGAGTGGGCAGGCTTTTTCAGTGAAGTATTTTCCGCGCTCAAACACACCTGAATTTTTCGTCAAGGCCTCCACCGTGAGAGCTGCGATGCAAGTTCGATTGTCGACCGGAATGAGATTCAAGATGGCTTTCGAAACAGAGGATTCCTCTAGAATTAGTTGGTTTATGGGAACCATATCTTCCACCCAACCGGCCGATCCCATCCGGTGGCCTAATTCTCCCTGGAGACTTCTGCAGGTAACGTGGGACGAGCCGGATTTGTTACAGAATGTGAAGTTTGTGAACCCATGGTCAGTAGAGGTGGTGACAAACACTACACCTTATCATGTCTCACCCTTTGCACCACAAAGAAAGAAACCAAGGCTTCAGTCGAACTCCCATTTTTCGAGAATGCTAGACGATGATCGTGCAGGCATACAGGGAGCCAGGCATGTTAAATCACTGAATCCTCCGTTAAAGGAGCCGAACGTTGAAAATCCAACGAATATTTTGAAAGAAAACGAGATGAAAACACCACACATCTTATTGTTTGGTCAAGTGATTCTTCCTGGCCAGAGAGTTTCCAAGGGTAACTCTAAAGACACTACCGGAAATAGTTCGTCGGAGAAGACAGATGCTTCCTACGGTGCTGCTACGTCGCCGCATTGGAATAGTTCGCCGGAAAACTTATCTGATGCAGGGTTTGTATGGTGCAAAGATCACCAGAAAACTGTTCTCGATAGCGGCGATCGTGAGGAATTAGTGGATCAATTGTTCTTCACGCGACATTATTTCCCAATCCCGTAA | 1551 | 45.71 | TMDSMKEEKGNLDSQLWHACAGGMVQIPSIDSKVFYFPQGHAEQARGDLNFGSPKISPLILCTVSAVRFMADSETDEVFAEITLIPLRSNDFDREEDDWTGGSNQSESEEKHTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSANPPVQTIHAKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNCKKLVAGDSVVFLKSENGELQIGIRRAKRGIGGRFDFSIPPLATNSNGDPRGKVTAESIIKAVNLASSGQAFSVKYFPRSNTPEFFVKASTVRAAMQVRLSTGMRFKMAFETEDSSRISWFMGTISSTQPADPIRWPNSPWRLLQVTWDEPDLLQNVKFVNPWSVEVVTNTTPYHVSPFAPQRKKPRLQSNSHFSRMLDDDRAGIQGARHVKSLNPPLKEPNVENPTNILKENEMKTPHILLFGQVILPGQRVSKGNSKDTTGNSSSEKTDASYGAATSPHWNSSPENLSDAGFVWCKDHQKTVLDSGDREELVDQLFFTRHYFPIP | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 618630 | 620273 | + | Bma016347.1 | Bma03g00079 | 78752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00079 | 516 | Pfam | Auxin response factor | 251 | 334 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Bma03g00079 | 516 | PANTHER | AUXIN RESPONSE FACTOR 16 | 420 | 500 | - | - | |
Bma03g00079 | 516 | Gene3D | - | 113 | 217 | IPR015300 | - | |
Bma03g00079 | 516 | ProSiteProfiles | B3 DNA-binding domain profile. | 115 | 217 | IPR003340 | GO:0003677 | |
Bma03g00079 | 516 | PANTHER | AUXIN RESPONSE FACTOR 16 | 6 | 408 | - | - | |
Bma03g00079 | 516 | SUPERFAMILY | DNA-binding pseudobarrel domain | 109 | 218 | IPR015300 | - | |
Bma03g00079 | 516 | Gene3D | - | 288 | 361 | - | - | |
Bma03g00079 | 516 | Pfam | B3 DNA binding domain | 115 | 216 | IPR003340 | GO:0003677 | |
Bma03g00079 | 516 | MobiDBLite | consensus disorder prediction | 441 | 474 | - | - | |
Bma03g00079 | 516 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 420 | 500 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Bma03g00079 | 516 | MobiDBLite | consensus disorder prediction | 93 | 116 | - | - | |
Bma03g00079 | 516 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 6 | 408 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Bma03g00079 | 516 | CDD | B3_DNA | 114 | 215 | IPR003340 | GO:0003677 | |
Bma03g00079 | 516 | MobiDBLite | consensus disorder prediction | 93 | 121 | - | - | |
Bma03g00079 | 516 | SMART | B3_2 | 115 | 217 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g00079 | Bma08g01153 | CCT | |
Bma03g00079 | Bma08g01153 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00079 | Bma-Chr3:618630 | Bma04g00608 | Bma-Chr4:5796813 | 1.39E-179 | dispersed | |
Bma01g01923 | Bma-Chr1:71019323 | Bma03g00079 | Bma-Chr3:618630 | 1.70E-176 | wgd | |
Bma11g00175 | Bma-Chr11:1567754 | Bma03g00079 | Bma-Chr3:618630 | 2.29E-177 | wgd | |
Bma03g00079 | Bma-Chr3:618630 | Bma08g01153 | Bma-Chr8:50555010 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56957 | PF02362 | B3 | 9.60E-21 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00079 | - | - | pvy:116109828 | 574.704 |