Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00079 ACAATGGATTCCATGAAAGAAGAAAAAGGGAATTTAGATTCTCAACTATGGCATGCTTGTGCTGGTGGAATGGTTCAAATTCCATCCATTGATTCTAAAGTCTTTTATTTTCCTCAAGGCCACGCAGAACAGGCTCGTGGGGACTTGAACTTTGGAAGTCCTAAAATTTCCCCTCTCATTCTCTGCACAGTTTCTGCAGTTCGATTCATGGCGGATTCAGAAACGGACGAGGTGTTTGCTGAGATTACTTTAATTCCTTTGAGAAGTAATGATTTTGATCGTGAAGAAGATGACTGGACTGGGGGAAGTAATCAGAGTGAGAGCGAAGAAAAGCATACTTCCTTTGCTAAAACTTTGACTCAATCCGACGCCAACAATGGCGGTGGATTCTCCGTTCCTCGCTATTGCGCAGAAACGATTTTTCCGCCTTTGGACTACTCGGCGAATCCACCCGTTCAGACAATTCACGCGAAGGATGTTCACGGCCAGATTTGGAAGTTTAGGCATATTTATCGGGGGACTCCTCGCCGCCACCTTTTGACGACTGGTTGGAGTAATTTCGTAAATTGCAAGAAGCTTGTGGCCGGAGATTCAGTCGTGTTCTTGAAATCGGAGAATGGAGAGCTTCAGATCGGAATAAGGAGGGCAAAGAGGGGAATAGGAGGGCGATTTGATTTCTCAATTCCACCATTGGCGACAAATTCAAATGGCGATCCGAGAGGAAAAGTGACTGCTGAATCGATAATCAAAGCAGTAAATCTTGCTTCGAGTGGGCAGGCTTTTTCAGTGAAGTATTTTCCGCGCTCAAACACACCTGAATTTTTCGTCAAGGCCTCCACCGTGAGAGCTGCGATGCAAGTTCGATTGTCGACCGGAATGAGATTCAAGATGGCTTTCGAAACAGAGGATTCCTCTAGAATTAGTTGGTTTATGGGAACCATATCTTCCACCCAACCGGCCGATCCCATCCGGTGGCCTAATTCTCCCTGGAGACTTCTGCAGGTAACGTGGGACGAGCCGGATTTGTTACAGAATGTGAAGTTTGTGAACCCATGGTCAGTAGAGGTGGTGACAAACACTACACCTTATCATGTCTCACCCTTTGCACCACAAAGAAAGAAACCAAGGCTTCAGTCGAACTCCCATTTTTCGAGAATGCTAGACGATGATCGTGCAGGCATACAGGGAGCCAGGCATGTTAAATCACTGAATCCTCCGTTAAAGGAGCCGAACGTTGAAAATCCAACGAATATTTTGAAAGAAAACGAGATGAAAACACCACACATCTTATTGTTTGGTCAAGTGATTCTTCCTGGCCAGAGAGTTTCCAAGGGTAACTCTAAAGACACTACCGGAAATAGTTCGTCGGAGAAGACAGATGCTTCCTACGGTGCTGCTACGTCGCCGCATTGGAATAGTTCGCCGGAAAACTTATCTGATGCAGGGTTTGTATGGTGCAAAGATCACCAGAAAACTGTTCTCGATAGCGGCGATCGTGAGGAATTAGTGGATCAATTGTTCTTCACGCGACATTATTTCCCAATCCCGTAA 1551 45.71 TMDSMKEEKGNLDSQLWHACAGGMVQIPSIDSKVFYFPQGHAEQARGDLNFGSPKISPLILCTVSAVRFMADSETDEVFAEITLIPLRSNDFDREEDDWTGGSNQSESEEKHTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSANPPVQTIHAKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNCKKLVAGDSVVFLKSENGELQIGIRRAKRGIGGRFDFSIPPLATNSNGDPRGKVTAESIIKAVNLASSGQAFSVKYFPRSNTPEFFVKASTVRAAMQVRLSTGMRFKMAFETEDSSRISWFMGTISSTQPADPIRWPNSPWRLLQVTWDEPDLLQNVKFVNPWSVEVVTNTTPYHVSPFAPQRKKPRLQSNSHFSRMLDDDRAGIQGARHVKSLNPPLKEPNVENPTNILKENEMKTPHILLFGQVILPGQRVSKGNSKDTTGNSSSEKTDASYGAATSPHWNSSPENLSDAGFVWCKDHQKTVLDSGDREELVDQLFFTRHYFPIP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 618630 620273 + Bma016347.1 Bma03g00079 78752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00079 516 Pfam Auxin response factor 251 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma03g00079 516 PANTHER AUXIN RESPONSE FACTOR 16 420 500 - -
Bma03g00079 516 Gene3D - 113 217 IPR015300 -
Bma03g00079 516 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Bma03g00079 516 PANTHER AUXIN RESPONSE FACTOR 16 6 408 - -
Bma03g00079 516 SUPERFAMILY DNA-binding pseudobarrel domain 109 218 IPR015300 -
Bma03g00079 516 Gene3D - 288 361 - -
Bma03g00079 516 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Bma03g00079 516 MobiDBLite consensus disorder prediction 441 474 - -
Bma03g00079 516 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 420 500 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma03g00079 516 MobiDBLite consensus disorder prediction 93 116 - -
Bma03g00079 516 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 408 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma03g00079 516 CDD B3_DNA 114 215 IPR003340 GO:0003677
Bma03g00079 516 MobiDBLite consensus disorder prediction 93 121 - -
Bma03g00079 516 SMART B3_2 115 217 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00079 Bma08g01153 CCT
Bma03g00079 Bma08g01153 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00079 Bma-Chr3:618630 Bma04g00608 Bma-Chr4:5796813 1.39E-179 dispersed
Bma01g01923 Bma-Chr1:71019323 Bma03g00079 Bma-Chr3:618630 1.70E-176 wgd
Bma11g00175 Bma-Chr11:1567754 Bma03g00079 Bma-Chr3:618630 2.29E-177 wgd
Bma03g00079 Bma-Chr3:618630 Bma08g01153 Bma-Chr8:50555010 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56957 PF02362 B3 9.60E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00079 - - pvy:116109828 574.704