Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00101 ATGGAATTTCATTTAAATAATAATGGTCCCTCGGCGAGGGGACTGATTAAAATAAACCAGCACATGCAAGATGATCGCAAGGAAGTAAGTAGTAGAATTACAGGTGAGAAAGAACATATCTCACAGGAAGATGAGTCAAAATTAAATGAGGATGCAGTAGATGTGATTGATGGGAGACAAATGGAAGCAATGCATTTCAAAGTTTGCACTCCGATAGGTTTGCAGAGATCACACCAGGAGTCACAAGAACTTGCAGTTTGCTGGGAGAGATTCCTACCTCTTAGATCTGTGAAGGTTCTTCTGGTGGAAAACGATGATTCAACCCGCCATGTTGTGAGTGCTTTACTTCGAAATTGTGGCTATGAAGTTGCAGCTGTTGCAAATGGAATACAAGCTTTGAAGATATTAGTAGATGTAACCTCCAAAGTTGATCTTGTTCTGACTGAAGTAGTCACTCCTCTTTTGTCAGGCATTGGCCTTTTATCCAAGATGATGGCCCACAAAAATTGCAATAATATCCCTGTGATTATGATGTCATCTCATGATTCTATGAGTATAGTCTTTAAGTGTTTGTCGAAGGGTGCAGTTGACTTTTTAGTGAAGCCTATTCGAAAGAACGAGCTTAAAAACCTCTGGCAGCATGTTTGGAGGAAATGCGACAGTTATAGTGGTATACGTACTACTAAGAAGTGTACAAGGTCAAGAAGTGCTGAAGAGTCAGATAACAACTCTGGTAGCAATGGTGAAGACGACAATGGAAGCAGTCATTTGAATTTCAGGGATGGAAGTGATAATGGTAGTGGCACTCAGAGTTCTTGGACGAAAAGAGCTGTTGAAGTTGATAGTCCCAAGCCAATGTCTTCTTGGGACCAGTTAGCTGATCCTCCAGACAGCACTTGTGCCCAGGTTATTCATTCAGATCCCGAAGCATTGGGCAATGATTGGATTCCCATGACTTCGACAAGGGGGTGTGAAAGCCAAGAAAAAGAACTTGGTGAAGACTCGGAGATTAGGAGACCAAGGGTTAAAAATGTGCCGCTGGATATTGCAAGGAATAAGTCGCTAGCCTTTGTAGGAGGGACCAATATTGACAGAGTTTCTGAAACGAAGTCAAATAAAAATGATAAGCATCTGGATAATGGACATAATGACATCAATGTTGAAGGCTCACGCGGCAATCCAAAGAACCAAGCGTCCACTCAACTATGTTTCATGGATAATGACTGCAATCCCGGGATAGAAAGTGCATTAGTTGATGTTCCAATTGGCAACTCCAAGAATTCTGTGAAAAAAGATGGTATGACACGTGATAATGATGAATTACCTTCCCTTGAGCTTAGTTTGAAAAGGCTGCAAGATGTCAAAGATATTGGAACTAGTGGTCCAGTTCGAAACACTTTACGGCATTCAGACCTCTCAGCCTTCTCAAGGTATCCTTGCAAGTTTTCCGTTCTACCCATGCCTAATTTATTCAGTTTAGAATTTGAGGTGACAATATCTCTATCTTGCAGGTATAATTCTATAGCTGTGGCTAATCAAACTCATACAAGAAATCATAGCTATTCTCGATATGATAATAGTTCAGAGGCACCAAAAACAGAATCAATGCTGAATCTTCAATCTTATTCTCTCAACACCCCACTGAATCAGCAATCTAATGGCAGTAGCAACAACAATGATGTGGGCTCCACTACAGATAATGTCTTCAACAAGCCTATGGCAACAGGTGATGAGTCTTTTGTTTTTCAATCCTCACTTAATTTCCCTTTATCAGAATTTCAACTTATGACTTATGGTAAATCTGAGACAGAATTAGCAAGTACAAATGCAGCAAAATTCAAGGGTGCCAATCAGGTTCGAACGACTAATCATCATCATTGCCACCACCATGTTGTAGACATTCCTGATCAGCTGCAGCTAGCCAATAATGGCAAGTTGTCTCAGAAAAATATTGCCTCAACAGATCTGCATTGTGGGTCATCCAATACTTTAAATGGCAGTGCAACTGGAAGCAACTTTGGGAGTAATGGTATTGAAGGAAGCTGTGCAGCTTTTAATGCCAAAGAGTCGAACATGGAGATTGAGAACAGACTAACTGGAAAAGACGAAGCCATTTGTGGACTAGGATCAGAGAGACAGAGTGGACCTGATCAAAATCGATCTGCTCAAAGAGAAGCTGCTCTGAATAAATTTCGTCAGAAGAGGAAAGAGAGATGCTTTGAGAAGAAGGTCCGCTACCATAGTAGGAAGAAATTAGCGGAGCAACGACCCCGCGTTCGAGGACAATTTGTGCGACAGGCTTTACCCAAAGACAGGCGCATAGCTGACATGCAATAG 2337 41.38 MEFHLNNNGPSARGLIKINQHMQDDRKEVSSRITGEKEHISQEDESKLNEDAVDVIDGRQMEAMHFKVCTPIGLQRSHQESQELAVCWERFLPLRSVKVLLVENDDSTRHVVSALLRNCGYEVAAVANGIQALKILVDVTSKVDLVLTEVVTPLLSGIGLLSKMMAHKNCNNIPVIMMSSHDSMSIVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRKCDSYSGIRTTKKCTRSRSAEESDNNSGSNGEDDNGSSHLNFRDGSDNGSGTQSSWTKRAVEVDSPKPMSSWDQLADPPDSTCAQVIHSDPEALGNDWIPMTSTRGCESQEKELGEDSEIRRPRVKNVPLDIARNKSLAFVGGTNIDRVSETKSNKNDKHLDNGHNDINVEGSRGNPKNQASTQLCFMDNDCNPGIESALVDVPIGNSKNSVKKDGMTRDNDELPSLELSLKRLQDVKDIGTSGPVRNTLRHSDLSAFSRYPCKFSVLPMPNLFSLEFEVTISLSCRYNSIAVANQTHTRNHSYSRYDNSSEAPKTESMLNLQSYSLNTPLNQQSNGSSNNNDVGSTTDNVFNKPMATGDESFVFQSSLNFPLSEFQLMTYGKSETELASTNAAKFKGANQVRTTNHHHCHHHVVDIPDQLQLANNGKLSQKNIASTDLHCGSSNTLNGSATGSNFGSNGIEGSCAAFNAKESNMEIENRLTGKDEAICGLGSERQSGPDQNRSAQREAALNKFRQKRKERCFEKKVRYHSRKKLAEQRPRVRGQFVRQALPKDRRIADMQ 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 830343 834940 + Bma016370.2 Bma03g00101 78774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00101 778 MobiDBLite consensus disorder prediction 366 397 - -
Bma03g00101 778 SUPERFAMILY CheY-like 96 225 IPR011006 -
Bma03g00101 778 MobiDBLite consensus disorder prediction 230 301 - -
Bma03g00101 778 MobiDBLite consensus disorder prediction 238 277 - -
Bma03g00101 778 ProSiteProfiles CCT domain profile. 724 766 IPR010402 GO:0005515
Bma03g00101 778 MobiDBLite consensus disorder prediction 545 568 - -
Bma03g00101 778 Gene3D - 97 251 - -
Bma03g00101 778 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 754 IPR045279 GO:0009736
Bma03g00101 778 SMART REC_2 97 212 IPR001789 GO:0000160
Bma03g00101 778 Pfam CCT motif 724 766 IPR010402 GO:0005515
Bma03g00101 778 ProSiteProfiles Response regulatory domain profile. 98 216 IPR001789 GO:0000160
Bma03g00101 778 MobiDBLite consensus disorder prediction 368 384 - -
Bma03g00101 778 MobiDBLite consensus disorder prediction 21 47 - -
Bma03g00101 778 Pfam Response regulator receiver domain 99 210 IPR001789 GO:0000160
Bma03g00101 778 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 30 754 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00101 Bma-Chr3:830343 Bma05g01202 Bma-Chr5:51449544 6.48E-17 dispersed
Bma12g00332 Bma-Chr12:5430937 Bma03g00101 Bma-Chr3:830343 1.66E-09 dispersed
Bma14g01751 Bma-Chr14:37731854 Bma03g00101 Bma-Chr3:830343 8.42E-15 dispersed
Bma15g00201 Bma-Chr15:2069839 Bma03g00101 Bma-Chr3:830343 2.19E-13 dispersed
Bma03g00101 Bma-Chr3:830343 Bma10g01320 Bma-Chr10:46835309 2.73E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56959 PF00072 Response_reg 2.70E-19 CL0304 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00101 K12129 - qsu:112015800 696.041