Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00116 ATGATGGGTGCAGAGGACGGCTCAGGAAGTACTGCAGCTCCGTGCCAGGTTTCTGGCTCTCGGAAAATATTCTGGCGTTCAGCATCGTGGTCTACATCTCGTACCTTTCCTCATAACCCCGATACAGCAGAATCAGGAGTGGATTTGAATGGCAATAGTGCCAACAACAATGGAATAAGAAGAAGATTTCCTGCTCCTGTAAACCCCAGATCTCAAGAGAATAGCAAGGGAAGGCTATGTTTGCCGCCTTTGCAGCCCTTGTCGATTGCTCGGAGAAGCCTAGATGAGTGGCCAAAGGCAGGCTCGGACGACATTGGGGAGTGGCCATTACCTTCTACTCCAAGAGGGATAGGGAGTGCGGAAAGATTAAAGCTTGATTTGTTAACGATTCAGAAAGTTCCAGACAAGAATAGTGGGCTTGTGAAGAAGGATAAAATTGCTGTCTTTGACAAAGAGTGTTCAAAAGTGGAAGAACATGTTTATCTTGGTGGGGATGCTGTTGCTCGAGATAGGGATATTCTTCGGCAGAACGGAATCACTCATATTTTGAATTGTGTGGGATTTGTCTGTCCCGAATACTTTAAAGCGGATTTTACTTACAGAACTCTATGGTTGCAGGATAGTCCTTCTCAGGATATAACTAGTATTTTATACGATGTTTTTGACTACTTTGAGGATGTTAGAGACCTAGGTGGGAGGGTGTTTGTTCATTGTTGCCACGGGGTTTCTCGTTCCACATCGCTGGTGATTGCCTATTTAATGTGGAGAGAAGGTCGGAGTTTTGATGATGCATTTCAGTATGTAAAGGCAGCTAGAGGCATTGCTGATCCAAATATGGGTTTTGCTTGCCAGTTATTGCAGTGCCAAAAGAGAGTCCATGCATTTCCTTTGAGTCCAAGCTCACTATTGAGAATGTATAGAATTGCTCCACATTCCCCATATGACCCTTTGCATCTTGTCCCAAAAATGTTAAATGATCCTTCTCCTGGAGATTTGGATTCAAGAGGTGCATTTATTATTCACACACCATCTGCAATATATCTCTGGGTTGGCAAGAATTGCGAGGCGATCATGGAAAGAGACGCGCGGGGGGCTGCTTCTCAGATTGTTCGATACGAGAAAGTGGAATGGTCGATAACAGTTATCGAGGACGAGAAAGAGCCAGCTTCTTTTTGGGATTCTTTTTCGAGTCTGTTGCCTTTGAGGTATAAACCTGGGCATGGAGTGAATGTGGGGGAGTCAAAGGTTGAGATTTTCCCAGGGGAGAGAAAGGTGGATTCATATAATGTTGACTATGAGATTTTCCAGAAAGCTATTTTGGGTGGTTTTGTACCTTCTTTTGCTTCTTCAGAGAATGAAAATCAAACCCAGCTTCCTGCTAGAGAAAGCAGCTGGAGCACGGTGAGGAGGAAGTCTGCTTCTGGTGATATGAGAGAGTTTGTATCAGCACCCAAAATAGCTTTTTCCCGGGTTTATTCCGATTCTACGATGGTTGCATTTTCATCATCGTCTCCTGTTCATCTCTCTCCTGACTCAGTCTCCTCTGATACAAGCACCAGTTCTCAGTATTTTTCAGAAAGCTCCCTTGGTTCTTCATCTGAGTTTTTACCTGCATCTGCAACTTCAACTTCGCACAGCTCGTGCAACACGTCCCTCTGCTCATCCAAAACGTCCTCTCATCCGATACCCAACAGTTCAGAATCTCCTTCGCTTGCGGAACGCAGAGGTAGCTTCTCCAAGTTTCTTAAGCTGCCAAAGATGTCTGAAAAGATGACGCTACTTGCTCATTTGAGGATTCATATAATGTATGATATGGATGTAAATTCTGAGTCAGAATTAAGTAACAAGGAGTTAGACCGTGTGGAACAGATTGACTGGAATCAGCTTCTCTCCCAAGCCCTAGTTTACCGCCACGACGCTTCTGGGGTAGCTTTCTTTCTTTTCTGTGTTTGTTTACTCGCTTTGACCATTGTCTACATCGCACTTGCCGTGTTTGCATCTGGTTGGATTGAGGTTTCATGCTGGATTCTGACTGGTGAACGACAGACTGCTGTCATTAGATCAAGATATGTCCAAGTGTTACTTAATCAAGATATGAGTTTTTTTGATACATACGGTAACAACGGAGACATCGTTAGTCAAGTTTTGAGTGATGTGCTTCTCATACAGTCTGCTCTTAGTGAAAAAGTTGGAAACTACATTCATAACATGGCTACGTTTTTCAGCGGCCTTGTGATTGGATTTGTCAACTGCTGGCTGATTGCGTTGATAACTTTAGGTACCGGTCCTTTCATAGTTGCTGCGGGGGGTATCTCAAATATATTTCTCCATAGACTTGCTGAAAATATTCAAGACGCATATGCTGAGGCTGCTAGTGTTGCTGAGCAGGCTGTCTCTTATATTAGAACCCTCTATGCATTTACGAATGAAACGTTAGCCAAATATTCCTATGCAACATCGCTACAAGCAACTCTTAGATATGGCATACTGATTAGTCTTGTGCAAGGTCTTGGCCTTGGATTTACGTATGGACTTGCTATATGTTCTTGTGCCTTGCAACTGTGGATTGGAAGATTCTTGGTTACTCATGGAAAAGCTCATGGGGGTGAGGTTGTTACAGCTCTATTTGCTGTCATTTTAAGTGGCTTAGGTCTGAATCAGGCTGCAACAAATTTTTATTCATTTGACCAAGGACGCATAGCTGCTTATAGACTTTTTGAGATGATAAATCGATCGCTATCTGCAGCTAATCAGGATGGAACTTCACTTGCCACTGTTCAAGGAAACATTGAGTTTCGGAATGTATACTTCAGCTATCTATCTCGCCCTGAAATCCCTATATTAAGTGGATTTTACCTAACTGTACCTGCTAAGAAAGCTGTGGCACTTGTTGGAAGGAATGGATCAGGAAAAAGCAGTATAATCCCTCTTATGGAGAGATTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGAGAAAATATAAAAAACATGAAATTAGAATGGTTAAGAAGCCAGATTGGGTTAGTTACCCAGGAACCTGCCTTGCTAAGTTTAAGCATAAGAGATAATATTGCATATGGGCGTGATGCAACAATGGATCAAATTGAAGAAGCTGCTAAAATAGCACGTGCACACTCGTTTATTAGCTCACTTGGCAATGGATATGAGACACAGGTTGGTAAAGTTGGAATAGAATTGACAGAAGAGCAGAAAATAAAACTCTCAATTGCACGAGCTGTACTTTTGGATCCCACAATTCTTCTGCTTGATGAGGTGACTGGCGGTCTAGATTTTGAAGCTGAAAAGGCTGTACAGGCGGCCTTGGATCTTCTCATGTTAGGACGGTCTACAATAACAATAGCTCGACGGCTGAGCCTCATTAGGAATGCTGATTATATAGCTGTGATGGAGGAGGGGCAACTTGTTGAAATGGGTACTCACGATGAATTGCTAGCCCGTGATGGCCTTTATGCGGAGCTTCTTAAATGTGAAGAAGCAGCTAAACTTCCCAGGAGGATGCCAGTTAGAAACTATAAGGAGACATCAACCTTCCAAATTGAGAAGGATTCTTCTGCCAGTAACAGCTATCAAGAGCCTGCATCTCCTAAAATGGCAAAGTCACCCTCTCTTCAGAGAGTTCCTGCTGTACTCCGTCCATCAGATGGAACATTTAGCTCACTGGATTCGCCGAAAATTCGAAGCCCACCTTCGGAGAAAATATCAGAAAATGGCCAGTCCTTAGATTCATTTGAGAAGGAACCATCGATAACGCGGCAGGATAGTTTTGAAATGAGACTGCCACAGTTGCCGAAACTTGATGTTCATTCTGGACAGAAACAAACAGTAAATGGTTCTGACCCTGAATCTCCTGTTTCACCACTCTTGACATCTGATCCAAAAAGTGAACGCTCTCACTCTCAAACTTTCAGTCGTCCACATAGCCAATCTGATGACTTCCCCATAAAAGTGAAGAATGCCAAAGATAGCAGGCATCGTGAAGCGCCATCATTTTGGAGACTTGCAGAGCTGAGTTTTGCTGAATGGCTTTATGCTGTTTTAGGAAGCATTGGTGCTGCTATTTTTGGATCTTTTAATCCTCTTCTTGCTTATGTAATTGCTCTCATAGTAACAGCATATTACACACGCGAGGAAGGTCATCACCAGAGGCAGGAAATAGACAAATGGTGCTTGATCATTGCTTGCATGGGTGTAGTGACAGTTGTTGCCAATTTTTTGCAACACTTTTACTTTGGAATAATGGGGGAGAAAATGACTGAACGAGTTCGGAGAATGATGTTCTCAGCAATGCTGCGAAATGAAGTTGGATGGTTTGATGAAGAGGAAAACAGCGCTGACACCTTGTCCATGCGGTTGGCAAATGATGCAACATTTGTGCGAGCTGCTTTTAGCAACCGGCTTTCTATATTCATACAGGACAGTACTGCAATTATTGTCGCCTTTCTTATTGGGATATTGTTACAGTGGCGATTGGCGCTTGTAGCATTGGCAACATTACCAGTTTTGACTGTCTCTGCTATTGCTCAGAAGTTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAGATGCACAGAAATGCATCTTTGGTTCTCGAAGATGCAGTTCGAAATATATATACTGTAGTTGCATTTTGTGCGGGTAACAAGGTTATGGAACTTTACAGATTGCAACTAAAGACAATATTTAAGAAAAGCTTCCTTCACGGAGTAGCTATTGGCTGCGCATTTGGGTTTTCACAATTTCTTCTTTTCGCCTGTAATGCCCTTCTTCTATGGTACACTGCATTTTCTGTTGAACATGGTTATATGTCTCTGGCCACTGCTCTTAAAGGGTATATGGTTTTCTCTTTCGCAACTTTTGCGTTGGTCGAGCCTTTTGGGTTGGCTCCGTATATACTTAAACGACGTAAATCCCTTATTTCAGTTTTTGAAATCATAGATCGAGTGCCTAAGATCGACCCTGATGATAACTCAGCTATGAAGCCGCCCAATGTTTATGGTAGCATTGAGTTGAAAAATGTTGATTTCTGTTATCCTACTCGCCCAGAGCTTCTTATATTAAGTAATTTCAGTTTGAAGATCAACGGGGGACAAACTGTGGCTGTGGTTGGTGTTTCAGGGTCGGGAAAAAGCACCATAATATCTCTTATCGAGAGGTTTTACGATCCGGTCGCAGGTCAAGTTTTGCTGGATGGTCGAGATTTGAAACTTTACAACTTGAGATGGTTGAGGAACCATCTAGGTCTTGTTCAGCAGGAGCCCATTATATTTTCAACGACTATTCGAGAGAATATTATTTATGCAAGACATAATGCTAGCGAAGCGGAGATGAAAGAAGCTGCAAGAATAGCAAATGCCCACCATTTCATTAGCAGCTTACCTCATGGTTATGATACACACATAGGTATGAGAGGTGTGGAGTTGACCCCTGGACAAAAACAGAGAATTGCAATTGCGCGGGTTGTGCTAAAAAATGCTCCTATTTTACTGCTGGATGAAGCGAGCTCATCTATAGAATCTGAGTCAAGCCGGGTTGTACAAGAGGCTCTTGATACGCTAATCATGGGAAATAAAACCACTATTCTGATAGCACATAGAGCGGCAATGATGCGTCATGTTGACAATATTGTGGTTCTAAATGGAGGACGAATTGTGGAGGAGGGAGCCCATGATGCTTTGGTGGCCAAAAATGGTCTTTATGTCCGTTTGATGCAACCACACTTTGGAAAGGGTTTGCGTCAGCATCGGCTTGTATAG 5781 42.85 MMGAEDGSGSTAAPCQVSGSRKIFWRSASWSTSRTFPHNPDTAESGVDLNGNSANNNGIRRRFPAPVNPRSQENSKGRLCLPPLQPLSIARRSLDEWPKAGSDDIGEWPLPSTPRGIGSAERLKLDLLTIQKVPDKNSGLVKKDKIAVFDKECSKVEEHVYLGGDAVARDRDILRQNGITHILNCVGFVCPEYFKADFTYRTLWLQDSPSQDITSILYDVFDYFEDVRDLGGRVFVHCCHGVSRSTSLVIAYLMWREGRSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPGDLDSRGAFIIHTPSAIYLWVGKNCEAIMERDARGAASQIVRYEKVEWSITVIEDEKEPASFWDSFSSLLPLRYKPGHGVNVGESKVEIFPGERKVDSYNVDYEIFQKAILGGFVPSFASSENENQTQLPARESSWSTVRRKSASGDMREFVSAPKIAFSRVYSDSTMVAFSSSSPVHLSPDSVSSDTSTSSQYFSESSLGSSSEFLPASATSTSHSSCNTSLCSSKTSSHPIPNSSESPSLAERRGSFSKFLKLPKMSEKMTLLAHLRIHIMYDMDVNSESELSNKELDRVEQIDWNQLLSQALVYRHDASGVAFFLFCVCLLALTIVYIALAVFASGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFVNCWLIALITLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAASVAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWIGRFLVTHGKAHGGEVVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMINRSLSAANQDGTSLATVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIARAHSFISSLGNGYETQVGKVGIELTEEQKIKLSIARAVLLDPTILLLDEVTGGLDFEAEKAVQAALDLLMLGRSTITIARRLSLIRNADYIAVMEEGQLVEMGTHDELLARDGLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASNSYQEPASPKMAKSPSLQRVPAVLRPSDGTFSSLDSPKIRSPPSEKISENGQSLDSFEKEPSITRQDSFEMRLPQLPKLDVHSGQKQTVNGSDPESPVSPLLTSDPKSERSHSQTFSRPHSQSDDFPIKVKNAKDSRHREAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIALIVTAYYTREEGHHQRQEIDKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSTAIIVAFLIGILLQWRLALVALATLPVLTVSAIAQKLWLAGFSRGIQEMHRNASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKTIFKKSFLHGVAIGCAFGFSQFLLFACNALLLWYTAFSVEHGYMSLATALKGYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNSAMKPPNVYGSIELKNVDFCYPTRPELLILSNFSLKINGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGAHDALVAKNGLYVRLMQPHFGKGLRQHRLV 1926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 909104 922147 + Bma016385.1 Bma03g00116 78789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00116 1926 Pfam ABC transporter 951 1095 IPR003439 GO:0005524
Bma03g00116 1926 SUPERFAMILY ABC transporter transmembrane region 651 910 IPR036640 GO:0005524|GO:0016021
Bma03g00116 1926 Gene3D - 1667 1918 IPR027417 -
Bma03g00116 1926 Gene3D - 921 1173 IPR027417 -
Bma03g00116 1926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1665 1913 IPR027417 -
Bma03g00116 1926 MobiDBLite consensus disorder prediction 1277 1317 - -
Bma03g00116 1926 Pfam ABC transporter 1695 1843 IPR003439 GO:0005524
Bma03g00116 1926 MobiDBLite consensus disorder prediction 1277 1322 - -
Bma03g00116 1926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 1164 IPR027417 -
Bma03g00116 1926 SUPERFAMILY Actin depolymerizing proteins 299 403 - -
Bma03g00116 1926 MobiDBLite consensus disorder prediction 1224 1254 - -
Bma03g00116 1926 Gene3D Protein tyrosine phosphatase superfamily 130 294 IPR029021 -
Bma03g00116 1926 MobiDBLite consensus disorder prediction 553 572 - -
Bma03g00116 1926 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 626 897 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00116 1926 MobiDBLite consensus disorder prediction 1183 1260 - -
Bma03g00116 1926 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 293 IPR029021 -
Bma03g00116 1926 MobiDBLite consensus disorder prediction 1183 1206 - -
Bma03g00116 1926 SMART AAA_5 1704 1891 IPR003593 -
Bma03g00116 1926 SMART AAA_5 957 1128 IPR003593 -
Bma03g00116 1926 MobiDBLite consensus disorder prediction 32 59 - -
Bma03g00116 1926 PANTHER ABC TRANSPORTER B FAMILY 653 1923 - -
Bma03g00116 1926 ProSiteProfiles Dual specificity protein phosphatase domain profile. 152 294 IPR020422 GO:0006470|GO:0008138
Bma03g00116 1926 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 272 IPR000387 GO:0016311|GO:0016791
Bma03g00116 1926 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 653 1923 - -
Bma03g00116 1926 CDD ABC_6TM_Pgp_ABCB1_D2_like 1349 1660 - -
Bma03g00116 1926 ProSitePatterns Tyrosine specific protein phosphatases active site. 236 246 IPR016130 GO:0016311|GO:0016791
Bma03g00116 1926 SMART dsp_5 152 291 IPR020422 GO:0006470|GO:0008138
Bma03g00116 1926 CDD DSP 153 287 - -
Bma03g00116 1926 Pfam ABC transporter transmembrane region 1359 1623 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00116 1926 Pfam ABC transporter transmembrane region 653 880 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00116 1926 SUPERFAMILY ABC transporter transmembrane region 1341 1662 IPR036640 GO:0005524|GO:0016021
Bma03g00116 1926 Pfam Dual specificity phosphatase, catalytic domain 160 290 IPR000340 GO:0008138|GO:0016311
Bma03g00116 1926 Gene3D Severin 303 398 IPR029006 -
Bma03g00116 1926 Coils Coil 776 796 - -
Bma03g00116 1926 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1354 1630 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma03g00116 1926 Gene3D ABC transporter type 1, transmembrane domain 625 911 IPR036640 GO:0005524|GO:0016021
Bma03g00116 1926 Gene3D ABC transporter type 1, transmembrane domain 1322 1665 IPR036640 GO:0005524|GO:0016021
Bma03g00116 1926 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 930 1165 IPR003439 GO:0005524
Bma03g00116 1926 MobiDBLite consensus disorder prediction 32 82 - -
Bma03g00116 1926 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1677 1914 IPR003439 GO:0005524
Bma03g00116 1926 SMART VILL_6 301 398 IPR007122 GO:0051015
Bma03g00116 1926 CDD ABC_6TM_Pgp_ABCB1_D1_like 653 905 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00116 Bma-Chr3:909104 Bma14g01839 Bma-Chr14:39345210 2.72E-97 dispersed
Bma04g01172 Bma-Chr4:30285245 Bma03g00116 Bma-Chr3:909104 1.32E-27 dispersed
Bma04g01175 Bma-Chr4:30620329 Bma03g00116 Bma-Chr3:909104 1.32E-27 dispersed
Bma03g01302 Bma-Chr3:25499425 Bma03g00116 Bma-Chr3:909104 6.12E-10 transposed
Bma08g01128 Bma-Chr8:50173947 Bma03g00116 Bma-Chr3:909104 3.20E-31 transposed
Bma15g00226 Bma-Chr15:2228148 Bma03g00116 Bma-Chr3:909104 1.40E-170 transposed
Bma03g00116 Bma-Chr3:909104 Bma08g01127 Bma-Chr8:50160185 6.18E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00116 K05658 - pvy:116115577 2238.77