Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00124 ATGGCGGAGAGTGGTGGACCGGCGATCGGAATAGACTTGGGGACGACCAACTCATGCGTCGGAGTGTGGATGAATGGTCGAGTTGAGATCATTATAAACGAGCAAGGGAAGAGGACTACACCATCTTACGTTGCTTTCGCCGATTTCCAGCGATTGATCGGTGATAACGCTAAGAGACAGGTCGCCGTTAACCCGACGAATACCGTCTTCGATGTGAAGAGACTCATCGGTAGAAAATTCAGTGATGAAACCGTACAGAATGATTTAAAGCTCTGGCCTTTTCGCGTCGTGGAAGGTCCTCGAGATGAACCGGAGATTGTCGTTATCCACAGAGGTCAGGAGAAACGGATGACGCCCATTGAAATCTCGGCGATGGTCTTGGAAAAGATGCGTGAAATCGCGACTGCAAAACTCGGATGTCCGGTGAAGAACGCTGTGGTCACAGTCCCTGCGTATTTCAATGATTCACAACGACAAGCCACAATGGACGCCGGAGTGATCGCAGGCCTCAACATCATGCGAATAATCAACGAGCCCACTGCAGCCGCCATTGCTTATGGGCTCGACAAGAAATCCGACAACGGAGGTCGGAAAACTGTTCTGGTCTTTGATTTGGGTGGAGGAACTCTAGACGTCTCTCTGCTCAGCATTCACCAAGGTAACATCGAAGTTAAGGCCACTAATGGCGATTCCCATCTCGGTGGAGAAGATTTCGATAATAGAATGGTGAACCATTTCGTGGATGAGTTTGCGATAAAGACAAATCAGGATATAAGAGGAAACCCAAAAGCAATTAGAAGATTGAGAAATTCTTGCGAGGAGGCAAAGATACTTCTCTCAGAAGCAGAAACAGCTTCACTTTCTATCGATTGTTTATACAGTGGAATTGATTTCTCTTCCTCCATAACGCGAGCTATGTTTGTCGAAATCAATAGGGATTTGTTCAGGAAGTGCATGAAAGCTGTCGAAAATTGTTTGAACGATGCAAATATGGAGAAAAGCTATGTTGACGAGGTTGTTCTTGTCGGTGGTTCAACAAGAATTCCACATTTACAGTATCTTTTGCGGGAGTTTTTCAACGGAAAGCAGCTATGCAAGAGCGTTAATCCGGACGAGGCGGTGGCACAGGGAGCGGCAATCCAGGCGGCAAAGATGACCGGTAAGTGTGACGGAGACTTGAGAAACTTCAACTTCTCAGAAGTCACGCCGCTCTCTATAGCCGTGGAGACAGACTCCGGCGAGGCTACAGTTTTGATCCCGAAAAATTCGAAAATTCCGACAGAGAAGAAGTACATTTGTACTACTTTCGAAGACAATCAAACCAAAATAAAGATCCTTGTTTACGAGGGCCAAGGAGTAGATATAGCCATGAGGAGAAACGTAATTGGATCGATTGAACTCAACGGTATACCTCCAGCTCCCAAGGGTTCTCAAAAAATTTCACTTTTGTTTCAGATCAACTCCAACGGGATCTTGACAATGACAGCTGAGGATCAGACGAATGGCTCCCGCGATTACAAGAACAAGACGACTATCACCATTGAAAGAAGAACAATGTCTAACGAAGAAATAAAGAAGAACAGTAGGCAAACTGAAAAGTACATGGCTGAAGATGAGGAGCTCAGGAAGAGGGTAAAAGCCAAAAACGCTTTGCAAACTTATGTCTTCAATATGCAGATTTCCATTGTCAACGATGAAGATCTTGGTCTAAGACTTGGGTGGGAAGACAAGAAAACTCTTGAAGATGCCATTCTAAACGTCAATAAATGGCTTGAAAATGTAGTGATTGCATGGACGTCGATGACTACAAAAAAATGTTGA 1821 45.09 MAESGGPAIGIDLGTTNSCVGVWMNGRVEIIINEQGKRTTPSYVAFADFQRLIGDNAKRQVAVNPTNTVFDVKRLIGRKFSDETVQNDLKLWPFRVVEGPRDEPEIVVIHRGQEKRMTPIEISAMVLEKMREIATAKLGCPVKNAVVTVPAYFNDSQRQATMDAGVIAGLNIMRIINEPTAAAIAYGLDKKSDNGGRKTVLVFDLGGGTLDVSLLSIHQGNIEVKATNGDSHLGGEDFDNRMVNHFVDEFAIKTNQDIRGNPKAIRRLRNSCEEAKILLSEAETASLSIDCLYSGIDFSSSITRAMFVEINRDLFRKCMKAVENCLNDANMEKSYVDEVVLVGGSTRIPHLQYLLREFFNGKQLCKSVNPDEAVAQGAAIQAAKMTGKCDGDLRNFNFSEVTPLSIAVETDSGEATVLIPKNSKIPTEKKYICTTFEDNQTKIKILVYEGQGVDIAMRRNVIGSIELNGIPPAPKGSQKISLLFQINSNGILTMTAEDQTNGSRDYKNKTTITIERRTMSNEEIKKNSRQTEKYMAEDEELRKRVKAKNALQTYVFNMQISIVNDEDLGLRLGWEDKKTLEDAILNVNKWLENVVIAWTSMTTKKC 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 948990 950986 - Bma016393.1 Bma03g00124 78797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00124 606 Gene3D Actin; Chain A, domain 4 234 317 - -
Bma03g00124 606 Gene3D - 549 605 IPR029048 -
Bma03g00124 606 PANTHER HEAT SHOCK PROTEIN 70KDA 5 597 IPR013126 GO:0005524|GO:0140662
Bma03g00124 606 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Bma03g00124 606 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Bma03g00124 606 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 548 IPR029047 -
Bma03g00124 606 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 551 IPR029047 -
Bma03g00124 606 SUPERFAMILY Actin-like ATPase domain 197 386 IPR043129 -
Bma03g00124 606 Pfam Hsp70 protein 8 589 IPR013126 GO:0005524|GO:0140662
Bma03g00124 606 Gene3D - 9 383 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 208 218 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 7 20 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 145 165 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 477 493 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 368 388 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 35 47 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 395 414 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 336 352 - -
Bma03g00124 606 PRINTS 70kDa heat shock protein signature 57 65 - -
Bma03g00124 606 Coils Coil 265 285 - -
Bma03g00124 606 Gene3D - 191 365 - -
Bma03g00124 606 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Bma03g00124 606 Gene3D - 70 125 - -
Bma03g00124 606 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 5 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00124 Bma-Chr3:948990 Bma10g00293 Bma-Chr10:2671676 0 dispersed
Bma09g00399 Bma-Chr9:33660075 Bma03g00124 Bma-Chr3:948990 1.62E-53 transposed
Bma01g01879 Bma-Chr1:69104163 Bma03g00124 Bma-Chr3:948990 0 wgd
Bma03g00124 Bma-Chr3:948990 Bma04g00660 Bma-Chr4:6354896 0 wgd
Bma03g00124 Bma-Chr3:948990 Bma08g00994 Bma-Chr8:49032753 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00124 K03283 - mus:103968995 724.931