Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00129 ATGGTTGGTATGGGTCAGAAAGATGCCTACGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACTCTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAGCTCCGAGTCGCCCCAGAGGAGCACCCTGTGCTCCTAACTGAGGCCCCTCTTAACCCAAAGGCTAACCGTGAGAAAATGACGCAAATCATGTTTGAAACCTTCAATACGCCTGCCATGTATGTAGCCATTCAAGCTGTACTTTCACTGTATGCTAGTGGCCGTACAACTGGTATCGTGTTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCTATCTATGAAGGATATGCTCTTCCACATGCCATTCTTCGCCTTGATTTGGCTGGGCGTGATCTCACTGATAACTTGATGAAAATTCTCACCGAGCGTGGGTACTCTTTTACTACCACAGCTGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGTTGGCATATATTGCTCTTGACTATGAGCAGGAAATGGAAACTGCCAAGACTAGCTCATCTGTTGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACCATTGGTGCTGAACGATTCCGATGCCCAGAGGTTCTCTTCCAGCCATCAATGATTGGAATGGAAGCAGCGGGCATTCATGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGGAAAGACCTGTATGGAAACATAGTCCTTTCTGGTGGTTCAACCATGTTTCCAGGAATTGCTGATAGAATGAGTAAGGAAATTTCGGCTCTCGCCCCCAGCAGCATGAAGATTAAGGTTGTGGCACCCCCAGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATATTGGCTTCTTTGAGCACCTTCCAGCAGGTTCATTTTGGCTTTCTATCCTCTTTTTTTTTTTTTCAGTTGGCATTGGTTGTTCCAGCAGTAATGGAGTGGATCAGTGAGGAAGAGCTGGAACCATTTCAGTCCATAAAATACAAAAACATTAAATTAAGATCTGGCTTATCCTTATTAAAGAAAGTTCTTATATTTTTTTATGCAGATGTGGATTGCCAAGGCAGGAGTATGATGAATCTGGGCCATCAATTGTGCATAGGAAGTGCTTCTAAACGGGGAAGAGTAGGATGGATAAGAGACGGGATTCCAGTTTCTTGCATCTGA 1230 43.98 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHFGFLSSFFFFQLALVVPAVMEWISEEELEPFQSIKYKNIKLRSGLSLLKKVLIFFYADVDCQGRSMMNLGHQLCIGSASKRGRVGWIRDGIPVSCI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 989516 990989 + Bma016398.1 Bma03g00129 78802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00129 409 PRINTS Actin signature 18 40 IPR004000 -
Bma03g00129 409 PRINTS Actin signature 72 85 IPR004000 -
Bma03g00129 409 PRINTS Actin signature 193 209 IPR004000 -
Bma03g00129 409 PRINTS Actin signature 97 116 IPR004000 -
Bma03g00129 409 PRINTS Actin signature 6 17 IPR004000 -
Bma03g00129 409 PANTHER ACTIN 1 314 IPR004000 -
Bma03g00129 409 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Bma03g00129 409 PANTHER ACTIN-97 1 314 - -
Bma03g00129 409 Gene3D - 2 313 - -
Bma03g00129 409 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Bma03g00129 409 SMART actin_3 1 322 IPR004000 -
Bma03g00129 409 Pfam Actin 7 313 IPR004000 -
Bma03g00129 409 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Bma03g00129 409 Gene3D - 95 295 - -
Bma03g00129 409 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Bma03g00129 409 Gene3D Actin; Chain A, domain 4 137 228 - -
Bma03g00129 409 SUPERFAMILY Actin-like ATPase domain 104 313 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00129 Bma-Chr3:989516 Bma04g01494 Bma-Chr4:50945111 0 dispersed
Bma11g00120 Bma-Chr11:1143658 Bma03g00129 Bma-Chr3:989516 0 wgd
Bma03g00129 Bma-Chr3:989516 Bma08g01117 Bma-Chr8:50119908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00129 K10355 - csv:101214247 639.032