Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00136 ATGAGTTTTGTTTTTCGCGGAACAAGAGCTCCAGATATTGAAAATGGTTTATCTGGGTATACCTCAGAGCGGCGTGCCTTGCGTGTTCACACTGGACGTCCTGTTAATTCCAACTCTCTTGCTTTTCTTGTCACAGTTCTGTTGCTATTCATGATACTTAACTCACATCAGATGTCTCCCAACTTTCTGCTTTGGCTTGTACTTGGTGTCTTTCTGATGGCCACCTCCTTGAGAATGTATGCCACTTGTCAACAACTTCAAGCTCAGGCCCAAGCTCATGCTATGGCAGCCAGTGGCATTCTTGGTCACACTGAACTGCGGTTGCATATGCCACATTCTATTGCACTTGCAACGAGGGGGCATTTGCAGGGCCTTAGACTTCAGCTTGCAGTACTTGACAGGGAATTTGATGATTTAGATTATGAAACCTTGAGAGCATTGGATTCCGACAATGCTCCATCAGCTCTATCAATGAGCGAAGAAGAAATAAACACTCTTCCAGTTCACAAGTACAAAATTGCTGGTTCTCAAAATGGAAATTCATTGGTTCAACAAGGCACGTCTTCTACATCTGTTGAGAAAAAACAAGACTCTACTAATCCAGTGGGTTGTACAAATGGCACAGAAGATGAACTAACCTGCAGTGTTTGCTTGGAGCAAGTTAACGTTGGAGAACTCATTCGTAGTTTTCCATGCATGCATCAGTTCCATGTTACTTGCATTGATCCGTGGTTGCGGCAACAAGGGACATGCCCGATCTGTAAGTTTAGGGCGGGGTCTGGATGGCATGAACAAGGCGAAAATGATTCTTCTTTCATGGTC 822 44.28 MSFVFRGTRAPDIENGLSGYTSERRALRVHTGRPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATSLRMYATCQQLQAQAQAHAMAASGILGHTELRLHMPHSIALATRGHLQGLRLQLAVLDREFDDLDYETLRALDSDNAPSALSMSEEEINTLPVHKYKIAGSQNGNSLVQQGTSSTSVEKKQDSTNPVGCTNGTEDELTCSVCLEQVNVGELIRSFPCMHQFHVTCIDPWLRQQGTCPICKFRAGSGWHEQGENDSSFMV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1029584 1032399 - Bma030961 Bma03g00136 78809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00136 274 MobiDBLite consensus disorder prediction 179 204 - -
Bma03g00136 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Bma03g00136 274 Pfam Ring finger domain 213 255 IPR001841 -
Bma03g00136 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Bma03g00136 274 PANTHER TARGET OF ERK KINASE MPK-1 1 273 - -
Bma03g00136 274 CDD RING-H2_PA-TM-RING 213 255 - -
Bma03g00136 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 273 - -
Bma03g00136 274 SMART ring_2 214 254 IPR001841 -
Bma03g00136 274 SUPERFAMILY RING/U-box 209 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00730 Bma-Chr2:36016279 Bma03g00136 Bma-Chr3:1029584 3.34E-10 dispersed
Bma03g00136 Bma-Chr3:1029584 Bma01g01300 Bma-Chr1:17778344 1.36E-11 dispersed
Bma03g00136 Bma-Chr3:1029584 Bma06g00083 Bma-Chr6:1321675 3.91E-12 transposed
Bma03g00136 Bma-Chr3:1029584 Bma02g00041 Bma-Chr2:391580 9.56E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00136 K16283 - csv:101216306 442.195