Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00140 ATGGCGAATCGGTGGTGGGCTGGAAATGCCGCCATGAGAGGCATGAACCCTCTGTCATCTCCGCCGTCTCTTCACCTGAGAAATCCCGAGGAAGATCACGACGAAATGAATCTATTTGGAAGCCGAAGAGAGCAAGAATTCATGGAGATGAACCACAATAACAACAATACAACTCCCACAAATAGCAGCTCTTCTACGAAGAAGCAAACCCTTGTTGAAGAAGAAAGCAATCAAGATATCGATCCGGATACTGAAGATCCAAACTCCGGTAGCCAAGAGAGCATCGAACCAGGTCCCGGAAGCTCAAGGCGCAGGCCTCGCGGCCGACCGGCTGGGTCTAAGAACAAGCCGAAACCTCCGATTGTGATTACCAAAGAGAGCCCCAACACTCTCCGAAGCCATGTGTTGGAAATCAGCAGCGGCAGTGACGTAGCCGAGAGCATAGCGACCTTTGCCCAACGCCGACAGAGAGGAGTCTCCGTCCTCAGCGGCAATGGCGTCGTCACTAATGTAACTCTACGGCAACCCTCTGCGCCGAGTGGAGTGCTCAATCTCCATGGAAGCTTCGAGATTTTGTCTCTCTCCGGCGCTTTTTTGCCAGCCCCATCGCCTCCGGGAGCAACCGGACTAACAATTTACTTAGCTGGTGGGCAAGGTCATGTGGTGGGTGGCTCGGTAGTTGGTTCTCTAATGGCTGCTGGGCCAGTGATGGTGATCGTAGCAACGTTCACTAATGCTATCTATGAGCGATTGCCGCTGGAGGATGAGGGTGGAAGTGAACAGCATATGCAAGTAGAGCTGCAATCAGGCGGAGGCAATTCAGGTTCTCATGATGTTGGTGGACAAGGCTCAACTCCTATGTATAATCTGCCTCCTAATTTGCTACCCAACAGTCAAAATCAAATGCCCCATGATTTGTTCTGGAGCTCTCCTCGCCCTCCATCCTCTTACTGA 954 51.89 MANRWWAGNAAMRGMNPLSSPPSLHLRNPEEDHDEMNLFGSRREQEFMEMNHNNNNTTPTNSSSSTKKQTLVEEESNQDIDPDTEDPNSGSQESIEPGPGSSRRRPRGRPAGSKNKPKPPIVITKESPNTLRSHVLEISSGSDVAESIATFAQRRQRGVSVLSGNGVVTNVTLRQPSAPSGVLNLHGSFEILSLSGAFLPAPSPPGATGLTIYLAGGQGHVVGGSVVGSLMAAGPVMVIVATFTNAIYERLPLEDEGGSEQHMQVELQSGGGNSGSHDVGGQGSTPMYNLPPNLLPNSQNQMPHDLFWSSPRPPSSY 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1061309 1062262 - Bma016410.1 Bma03g00140 78813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00140 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Bma03g00140 317 Gene3D - 131 267 - -
Bma03g00140 317 MobiDBLite consensus disorder prediction 257 317 - -
Bma03g00140 317 MobiDBLite consensus disorder prediction 26 49 - -
Bma03g00140 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 317 IPR014476 GO:0003680
Bma03g00140 317 MobiDBLite consensus disorder prediction 1 129 - -
Bma03g00140 317 CDD DUF296 132 215 IPR005175 -
Bma03g00140 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 258 - -
Bma03g00140 317 PIRSF ESCAROLA 37 316 IPR014476 GO:0003680
Bma03g00140 317 MobiDBLite consensus disorder prediction 50 71 - -
Bma03g00140 317 ProSiteProfiles PPC domain profile profile. 128 264 IPR005175 -
Bma03g00140 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 317 - -
Bma03g00140 317 MobiDBLite consensus disorder prediction 83 98 - -
Bma03g00140 317 MobiDBLite consensus disorder prediction 262 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00140 Bma-Chr3:1061309 Bma02g01165 Bma-Chr2:53776721 4.72E-76 dispersed
Bma03g00140 Bma-Chr3:1061309 Bma03g00284 Bma-Chr3:2105603 7.27E-117 wgd
Bma03g00140 Bma-Chr3:1061309 Bma08g01008 Bma-Chr8:49104811 6.40E-120 wgd
Bma03g00140 Bma-Chr3:1061309 Bma08g01108 Bma-Chr8:50062189 3.52E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00140 - - qsu:112039774 378.637