Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00142 ATGGCTGAAATTTGCTGCGAGCTTGTCGGGGAAGGTGAAACTTCTGTTACTGGAGAGCCCAGCTCTCGACCTTCGACACGTCGGAGAATGGAGGCTTGTCCTATTGCATTAATGGCGGACGCTCCTCTCTCGCCTCAGGCGCTCGAGAGCAGCCGAAAACGCCTCAAAGCCGATATCAACTCGCGTGACAGTGGAAACGCCATGGCGAGTTGTATTCCTGCGATCCATAAGATTGAAGAAAGGGATGAAGAAGATTCAGGTGAGGGAAAGAATCTCTGTACGAATCCATCTGTTTCTCACTCTAAAACTTTGAAGATGGCTCTAATGGATGATGAAATTCGACGTCCTAAGTTCGGGGTGACCGCCGTTTGTGGAAGGAGGAGAGAAATGGAAGATGCGGTCTCAATTCAACTATCTTTTTGCGATCAGAAAGGTGATGATTCTGAAAAACTCCATCTTTTCGGAGTGTTCGACGGCCATGGTTGCTCTCATGTGGCGATGAAGTGTAAGAAACGTTTGCATGAGATTGTAAAAGAAGAGATTAAACGAGAAGGTGAGCACGTGGACTGGAAGAGAACGATGGAGAGGTGCTATTTTCGAATGGACGAGGAGGTGAAGCAGTGCTCTAATGAGGTCAGAAGCTCGAAATGTAAGTGCGAATTTCAAGCTTCACAGAGCGACGCCGTTGGATCCACAGCTGTTATAGCTGTAGTCACCCCCGACAAAATTATCGTCTCCAACTGCGGCGACTCCCGCGCGGTGCTTTGCAGGAAGGGGAGAGCAATCCCTCTCTCATCTGACCACAAGCCGGATAGACCCGACGAACTGGAGCGGATCGAAGCCGCCGGTGGGAGGGTGATTTATTGGGACGGAGCAAGAGTTCTCGGAGTCCTAGCGATGTCCAGAGCCATAGGAGATAATTACCTAAAACCATACGTCATCCCGGAACCGGAGGTGACAATAACAGATCGGACGGCGGAGGACGAGTGTCTAATCTTAGCAAGCGACGGACTTTGGGACGTAGTAAAAAACGAAACAGCCTGCGGTGTCGCGCGCATGTGCCTGAAGCAGCCTGCGGTGTCGATAACATCGTCGGGAAGAGACGTGGCAACGGATGGTGGCGAAGAGTTGCCGGACAAGGGATGCTCGGACGCCTCAATATTGCTGACGAAGTTGGCACTGGCCAGGCATAGTTCAGATAACATCAGCGTTGTGGTCGTCGATCTGAGAAAATGA 1236 50.97 MAEICCELVGEGETSVTGEPSSRPSTRRRMEACPIALMADAPLSPQALESSRKRLKADINSRDSGNAMASCIPAIHKIEERDEEDSGEGKNLCTNPSVSHSKTLKMALMDDEIRRPKFGVTAVCGRRREMEDAVSIQLSFCDQKGDDSEKLHLFGVFDGHGCSHVAMKCKKRLHEIVKEEIKREGEHVDWKRTMERCYFRMDEEVKQCSNEVRSSKCKCEFQASQSDAVGSTAVIAVVTPDKIIVSNCGDSRAVLCRKGRAIPLSSDHKPDRPDELERIEAAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVIPEPEVTITDRTAEDECLILASDGLWDVVKNETACGVARMCLKQPAVSITSSGRDVATDGGEELPDKGCSDASILLTKLALARHSSDNISVVVVDLRK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1069355 1070763 + Bma016412.1 Bma03g00142 78815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00142 411 PANTHER PROTEIN PHOSPHATASE 2C 37 47 411 - -
Bma03g00142 411 PANTHER ALPHABET, ISOFORM E-RELATED 47 411 - -
Bma03g00142 411 Pfam Protein phosphatase 2C 118 371 IPR001932 -
Bma03g00142 411 SMART PP2C_4 107 407 IPR001932 -
Bma03g00142 411 ProSiteProfiles PPM-type phosphatase domain profile. 117 409 IPR001932 -
Bma03g00142 411 ProSitePatterns PPM-type phosphatase domain signature. 153 161 IPR000222 GO:0043169
Bma03g00142 411 SUPERFAMILY PP2C-like 114 410 IPR036457 -
Bma03g00142 411 CDD PP2Cc 117 409 IPR001932 -
Bma03g00142 411 Gene3D - 107 411 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00142 Bma-Chr3:1069355 Bma10g01171 Bma-Chr10:41120187 5.32E-89 dispersed
Bma07g01553 Bma-Chr7:51002858 Bma03g00142 Bma-Chr3:1069355 8.84E-48 dispersed
Bma15g00328 Bma-Chr15:3199290 Bma03g00142 Bma-Chr3:1069355 4.07E-76 dispersed
Bma05g00875 Bma-Chr5:46405842 Bma03g00142 Bma-Chr3:1069355 5.68E-92 transposed
Bma11g00104 Bma-Chr11:1042831 Bma03g00142 Bma-Chr3:1069355 1.45E-129 wgd
Bma14g00520 Bma-Chr14:5779888 Bma03g00142 Bma-Chr3:1069355 7.05E-135 wgd
Bma03g00142 Bma-Chr3:1069355 Bma07g00086 Bma-Chr7:1652327 7.29E-143 wgd
Bma03g00142 Bma-Chr3:1069355 Bma08g01106 Bma-Chr8:50040361 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00142 K14497 - egr:104454324 481.87