Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00176 ATGTGCGGTGATTTGAGTATTAAACTTGATTCTTTAAATTTTATCATGGAGAATGAAATTCAGAAGCAAAACAAGAGATTTTTCTCTGGTGGTTCCATTTTACTCGAATTAGCAGCCTCCGACGATCTTGATGCCTTCAGGAGAGAAGTTGAAGAGAAAGGCCTGGATGTCAATGAGGTGGCCTCTTGGTATGGCAGGAAAATTGGGTCGAGAAAGATGGGTTTCGAGGAAAGGACCCCACTTTTAATTGCAGCCATGTTTGCAAGTGCAAAGATCATGGAGTACATAATCGAAACTGGTAAGGTCGATGTTAATAGGGCTTATGGTTCAGATAAGGCCACTGCCCTCCATTGTGCTGCTGCTGGTGGATCAAGCGATTCAACAGAGGTTATGAAACTCTTACTTGATGCCTCTGCTGATGCCAATTGTGTCGATTCTAACGGCAACAAGCCTGTTGATTTGATCGCCCGGGCTATGAAATTGCTTCCCAATTCAAGGAGAAAGTCAATGGAGATGTTGCTTAACGGTTATTACTCGAGTGGTGAAGATGCTCGAAGCATTGAGCAAATTGAAAATCAGCAAAAACTCACAGGGGCGATGGTAGTAAAAGACGGGATTGAGAGGAAAGAATATCCTCTTGATGTTTCCTTGCCTGACATAAACATTGGGATTTATGGAACTGACGAGTTTAGAATGTATATTTTTAAGGTGAAACCGTGCTCCAGGGCCTACACCCACGATTGGACCGAATGCCCTTTCGCACATCCAGGCGAGAATGCTCGGCGACGGGATCCTAAAAAATATCCCTATAGCTGTGTCCCATGCCCTGAGTTCCGAAAAGGGGCTTGCCAAAAGGGTGAGGCGTGTGAATATGCACATGGAGTCTTTGAATCATGGCTTCACCCTGCTCAATACAGGACCAGGCTTTGCAAGGACGAGATCGGATGTGCAAGGAAGGTATGCTTTTTCGCCCACAAACCTGAAGAATTACGACCCGTCTATGCCTCCACTGGCTCGGCCTTGCCATCACCTCGCTCACACTCTGTCAGCGGCTCAGAAATGGAGGCTTCGAGTCCAATAGCTCTTGGTTCTTCGACTTTATCTTTGTCTGTGCCGGCTACATCAACCCCGCCCATGTCTCCTTTGGCATCTGTATCATCTCCCATGAGTGGGAGTTTGTGGCAAAACAAAGTCAGCCTCACACCTCCTACTTTGCAGTTGCCGGGTAGTAGACTGAAGGCTTCTTCTAGTGCTAGAGATTTAGATTTCGAAATGGAATTGCTCGGCTTGGAAAATCGAACCAAGCAACAGCAACAATATCAGCATTTAGTGGATGAGATATCTCGTCTCTCCTCTCCATCTTATTGGAACAATGATTTTAGGAGTGGAGAATTGAAACAGAACAACTATGGTGATATTTTGGGATCTTTAGATTCTCCAATGTTGTCTCAGTTTCAAGGTGTTTCACAAAAACTATCAACGCCAACTCAATTCCAAACAAGGCCTCAAACAAGCCAAGGAATGAATCAACTTCGTTCAAGTTACCCAGCCAAGCTATTCTCTTCACCAGCCAGGAAACCTTCGCCATTCGGCCTTGACTCATCGGCTGCAGTGGCATCTGCAGTTATGAACTCCAGGACATCCGCCTTTGCGAAGCGGAGCCAGAGTTTCATCGATCGTGCGGCTCCAGCCCAAGTTTCCAGCCATACAGCCTCTTCAAATCTGTCATCATGGGGCTCCCCAGATGGGAAATTAGATTGGAGTGTTCAAGGAGACGACCTAAAAACGCTGAAAAAGTCAGCTTCCTTCGGGATCAGAACTAGAGCCCCTGGCCCGCCATCTGCCCTTGATGAGCCAGATGTGTCCTGGGTTAACTTTTGGTTAAGGATGTTCCTTCGGAGAAATCTGGGTTGTTTTATGCCGATAAGTCAGCTCACAGTCTTGAGAAGAAGTCTCGCGAGTTTCTTCCATCTTGGGTGGAGCAGCTATACATAG 1995 46.37 MCGDLSIKLDSLNFIMENEIQKQNKRFFSGGSILLELAASDDLDAFRREVEEKGLDVNEVASWYGRKIGSRKMGFEERTPLLIAAMFASAKIMEYIIETGKVDVNRAYGSDKATALHCAAAGGSSDSTEVMKLLLDASADANCVDSNGNKPVDLIARAMKLLPNSRRKSMEMLLNGYYSSGEDARSIEQIENQQKLTGAMVVKDGIERKEYPLDVSLPDINIGIYGTDEFRMYIFKVKPCSRAYTHDWTECPFAHPGENARRRDPKKYPYSCVPCPEFRKGACQKGEACEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSALPSPRSHSVSGSEMEASSPIALGSSTLSLSVPATSTPPMSPLASVSSPMSGSLWQNKVSLTPPTLQLPGSRLKASSSARDLDFEMELLGLENRTKQQQQYQHLVDEISRLSSPSYWNNDFRSGELKQNNYGDILGSLDSPMLSQFQGVSQKLSTPTQFQTRPQTSQGMNQLRSSYPAKLFSSPARKPSPFGLDSSAAVASAVMNSRTSAFAKRSQSFIDRAAPAQVSSHTASSNLSSWGSPDGKLDWSVQGDDLKTLKKSASFGIRTRAPGPPSALDEPDVSWVNFWLRMFLRRNLGCFMPISQLTVLRRSLASFFHLGWSSYT 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1352233 1354227 + Bma016445.1 Bma03g00176 78849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00176 664 Pfam Ankyrin repeats (3 copies) 69 144 IPR002110 GO:0005515
Bma03g00176 664 MobiDBLite consensus disorder prediction 335 357 - -
Bma03g00176 664 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Bma03g00176 664 SMART ANK_2a 111 143 IPR002110 GO:0005515
Bma03g00176 664 SMART ANK_2a 76 106 IPR002110 GO:0005515
Bma03g00176 664 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Bma03g00176 664 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Bma03g00176 664 Gene3D - 270 332 - -
Bma03g00176 664 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Bma03g00176 664 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Bma03g00176 664 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 626 - -
Bma03g00176 664 SUPERFAMILY Ankyrin repeat 28 155 IPR036770 -
Bma03g00176 664 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Bma03g00176 664 Gene3D - 15 176 IPR036770 -
Bma03g00176 664 PANTHER UNKEMPT FAMILY MEMBER 19 626 IPR045234 -
Bma03g00176 664 MobiDBLite consensus disorder prediction 339 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00176 Bma-Chr3:1352233 Bma13g00133 Bma-Chr13:1338580 1.32E-141 dispersed
Bma03g00176 Bma-Chr3:1352233 Bma03g00245 Bma-Chr3:1885483 0 wgd
Bma03g00176 Bma-Chr3:1352233 Bma07g00064 Bma-Chr7:1482967 2.55E-21 wgd
Bma03g00176 Bma-Chr3:1352233 Bma08g01081 Bma-Chr8:49860477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56962 PF12796 Ank_2 1.00E-06 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00176 - - jre:109007162 830.861