Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma03g00188 | ATGGGAAGAACACACATGGGTCCTCATGGAGTCCTAAACACCATAACGCCATGCGCAGCCTGTAAGCTTCTTAGACGAAGATGCGCGCAGGAGTGTCCTTTTTCTCCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCTGTTCACAAAGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTAATGGAAGTGTCGGAGAGTCAAAGAGCAGACGCTGCTAATAGCCTAGTTTACGAAGCCAACTTGAGGCTAAGAGACCCAGTCTATGGCTGCATGGGTGCGATTTTAGCTCTGCAACAGCAAGTCCAGTCTTTAGAAGCTGAGCTTAATGCAATAAGGACTCAAATAATGAAACTCAAGTACAGTGAATCTAATATTCTACCTACTTCTCAAGTCACTTTTCTCAATTCTCCCGGAGCTGTTTCAGTCGCTGCACCGTCACATCCACCGCCGTCAACTCCGCCCTCACCACTTGCCCTTCCTCCCCTTTCCACATCTTCTGTCTACCACCAGTCTACCACTACCAACGACCACCGTACTATGTCCTCTCAAAATATTGCCTACTTTGCCTGA | 576 | 48.09 | MGRTHMGPHGVLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVSESQRADAANSLVYEANLRLRDPVYGCMGAILALQQQVQSLEAELNAIRTQIMKLKYSESNILPTSQVTFLNSPGAVSVAAPSHPPPSTPPSPLALPPLSTSSVYHQSTTTNDHRTMSSQNIAYFA | 191 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1449246 | 1449925 | - | Bma016456.1 | Bma03g00188 | 78861 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma03g00188 | 191 | MobiDBLite | consensus disorder prediction | 163 | 183 | - | - | |
| Bma03g00188 | 191 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 113 | IPR004883 | - | |
| Bma03g00188 | 191 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 190 | - | - | |
| Bma03g00188 | 191 | Coils | Coil | 96 | 123 | - | - | |
| Bma03g00188 | 191 | MobiDBLite | consensus disorder prediction | 145 | 162 | - | - | |
| Bma03g00188 | 191 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
| Bma03g00188 | 191 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 15 | 7 | 190 | - | - | |
| Bma03g00188 | 191 | MobiDBLite | consensus disorder prediction | 145 | 183 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g00188 | Bma-Chr3:1449246 | Bma14g01484 | Bma-Chr14:30097229 | 3.67E-46 | dispersed | |
| Bma08g00200 | Bma-Chr8:2381997 | Bma03g00188 | Bma-Chr3:1449246 | 7.95E-29 | dispersed | |
| Bma12g01009 | Bma-Chr12:42180444 | Bma03g00188 | Bma-Chr3:1449246 | 1.06E-25 | dispersed | |
| Bma03g00188 | Bma-Chr3:1449246 | Bma03g00208 | Bma-Chr3:1569533 | 7.47E-77 | wgd | |
| Bma03g00188 | Bma-Chr3:1449246 | Bma08g01069 | Bma-Chr8:49714152 | 8.32E-86 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56965 | PF03195 | LOB | 2.10E-40 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma03g00188 | - | - | vvi:100251929 | 254.603 |