Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00191 ATGGGAGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTATGGGACCAACACTGCCGCGTTGAGCACCGCCCTGTTCAGCAACGGACTAAGCTGCGGGAGCTGCTACGAGCTCACTTGCACTAACGATCCAAGATGGTGCCTTCCTGGCTCTATTATCGTCACCGCTACCAACTTTTGCCCACCTAACTTCGCTTTGGCCAATGACAATGGCGGCTGGTGCAATCCTCCTCTCCCGCATTTCGACTTGGCCGAGCCTGCTTTCCTCCAAATCGCTCAGTATCGCGCTGGAATTGTTCCAGTATCCTACAGAAGGGTACCCTGCTTGAAGAAAGGAGGAATAAGGTTCACCATTAACGGACACTCTTTCTTCATCTTAGTTCTGGTGACAAACGTAGGCGGTGCAGGAGATATCCATTCAGTGTCAATCAAGGGATCAAGAGGAGGGTGGCAGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACTCTGTGCTCAATGGTCAGGCCCTCTCTTTCCAAGTCACCAGCCAGATGACAAAGCTTGCAATCATTCCTTGCACTGTGATCTTGGAGACCCTTTTTCTTGGAAAGAGATTCAGGCCATTTGCTGACACTGTAAACTCTCTTTGTTCTTACAGTAGGAGTATTCAGCTTTCTCTCACAGTCCTCCTCCTCGGGGTTGGAATTGCTACAGTGACTGATCTGCAGCTCAATGCTCTAGGCTCAGTTTTATCTTTTCTTGCCATCATAACGACATGCGTTGCTCAGATTATGACTAATACAATCCAGAAGAAGTTCAGTGTTTCTTCAACCCAACTCCTTTACCAGTCTTCTCCCTACCAGGCGACAACCCTGTTAATCTCGGGGCCGTTTCTCGATGGATTTCTGACCGATCAAAACGTGTTTGCGTTTCGATATACCCCTAAAGTGTTGGACAAAGCCATCAAGAGATTCCTTGTAAGGAACATTGTGGAGCAGGCTGCTGTGAGGGATGTGCAAGAAGCTTGTGTCTATGATCAATACACTCTCCCTAAGCTTTATGCTAAGATGCAGTATTGCGTGTCCTGTGCTATTCACTCACATGTTGTGAGGGTTAGATCTCGTACTGATAGAAGGAATCGCGCGCCTCCACAGCGCTTTATCAGACGCAGAGATGATGCACCAAAGCCGGGTCAGCCTGGTCAAGGACCTCGGCCAGCTGGAGCTGGGAATCCTGTGCGCCCATGA 1236 49.51 MGGACGYGNLYSQGYGTNTAALSTALFSNGLSCGSCYELTCTNDPRWCLPGSIIVTATNFCPPNFALANDNGGWCNPPLPHFDLAEPAFLQIAQYRAGIVPVSYRRVPCLKKGGIRFTINGHSFFILVLVTNVGGAGDIHSVSIKGSRGGWQPMSRNWGQNWQSNSVLNGQALSFQVTSQMTKLAIIPCTVILETLFLGKRFRPFADTVNSLCSYSRSIQLSLTVLLLGVGIATVTDLQLNALGSVLSFLAIITTCVAQIMTNTIQKKFSVSSTQLLYQSSPYQATTLLISGPFLDGFLTDQNVFAFRYTPKVLDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRAPPQRFIRRRDDAPKPGQPGQGPRPAGAGNPVRP 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1466600 1473398 - Bma016459.2 Bma03g00191 78864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00191 411 Pfam Ribosomal protein S26e 309 387 IPR000892 GO:0003735|GO:0005840|GO:0006412
Bma03g00191 411 Gene3D - 1 109 IPR036908 -
Bma03g00191 411 Gene3D - 114 202 IPR036749 -
Bma03g00191 411 SUPERFAMILY Barwin-like endoglucanases 1 132 IPR036908 -
Bma03g00191 411 SMART dpbb_1 19 104 IPR007112 -
Bma03g00191 411 Pfam Expansin C-terminal domain 115 182 IPR007117 -
Bma03g00191 411 SUPERFAMILY PHL pollen allergen 111 183 IPR036749 -
Bma03g00191 411 Gene3D Ribosomal protein S26e 306 396 IPR038551 -
Bma03g00191 411 MobiDBLite consensus disorder prediction 372 392 - -
Bma03g00191 411 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 124 204 IPR007117 -
Bma03g00191 411 PRINTS Expansin/Lol pI family signature 97 113 IPR007118 GO:0005576
Bma03g00191 411 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Bma03g00191 411 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Bma03g00191 411 PRINTS Expansin/Lol pI family signature 151 165 IPR007118 GO:0005576
Bma03g00191 411 PRINTS Expansin signature 89 102 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 125 146 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 113 125 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 72 89 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 53 63 IPR002963 GO:0009664
Bma03g00191 411 PRINTS Expansin signature 41 52 IPR002963 GO:0009664
Bma03g00191 411 ProSitePatterns Ribosomal protein S26e signature. 355 362 IPR000892 GO:0003735|GO:0005840|GO:0006412
Bma03g00191 411 Pfam Lytic transglycolase 19 104 IPR009009 -
Bma03g00191 411 MobiDBLite consensus disorder prediction 369 411 - -
Bma03g00191 411 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 114 IPR007112 -
Bma03g00191 411 PANTHER EXPANSIN 1 180 - -
Bma03g00191 411 PANTHER EXPANSIN-A15 1 180 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00191 Bma-Chr3:1466600 Bma15g00149 Bma-Chr15:1543263 2.69E-108 dispersed
Bma11g00056 Bma-Chr11:692173 Bma03g00191 Bma-Chr3:1466600 1.60E-57 dispersed
Bma14g00454 Bma-Chr14:5239088 Bma03g00191 Bma-Chr3:1466600 8.75E-48 dispersed
Bma08g01060 Bma-Chr8:49681117 Bma03g00191 Bma-Chr3:1466600 4.00E-64 transposed
Bma03g00191 Bma-Chr3:1466600 Bma03g00200 Bma-Chr3:1535352 4.10E-113 wgd
Bma03g00191 Bma-Chr3:1466600 Bma08g01058 Bma-Chr8:49674715 1.37E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00191 - K20628 jre:108996953 353.984