Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00194 ATGATGCGTAACCTGGGCGAGGTGCTCGTCTTGTTACTGCTGGCTCCTGTGTTCGCGAGCAGTCTGAATCTCTCTTTGAACGATGACGTATTGGGGCTCATAGTGTTCAAGGCCGACATTCAAGATCCAAAGGGGAAGCTTGCCTCTTGGAGTGAAGACGATTATACGCCGTGTAGCTGGACCGGTGTCAAATGCAACCCGAGATCCAACCGGGTTATTGAGCTCGACCTCGCCGGATTTTCTCTCTCCGGTCGTTTAGGTCGTGGGCTATTGCAGCTACAGTTTCTACGGAAGCTATCGCTCTCAAACAACAATCTCACTGGAAAGGTAGGCCCTAACATTGCACGGATCGATAATCTCCGGGAGATCGATTTGGGGGACAACGGTTTTTCTGGGAGTTTACCTAGCGATTTCTTTGATCAATGTGGGTCTCTGAGAGCTATTTCTTTGGCCGGGAACAAATTTTCGGGAAAAATCCCTGACAGTTTAGCATCATGCGCCGGTCTTGCTGCGCTTAACTTGTCAACTAATCAGTTCTCTGGTTCGTTACCTTCTGGAATTTGGTCCCTAAGTGGCCTGCGCACACTTGATTTGTCGAATAATCTTTTAGAGGGCAACATTCAGAAGGAGATTCAAGGCTTGAATAATCTGCGTGTTATTAACTTGAGTAAGAATCTATTTTCCGGGCAGGTTCTTGATGGAATTGGAAGTTGTTTGCTCTTGCGATCTATAGACCTGAGCGAGAATCTTTTTTCCGGTAATCTTCCGGACGCATTCCGGCAACTGTCACTGTGTAATAACTTAAGGTTGCAGAAGAATTCATTTGTTGGCGAAGTTCCTGAGTGGATAGAAGAGATGAAAAGTCTAGAGATGTTGGATCTTTCAGCAAACTCATTTTCTGGTCAGATTCCCAATTCAGTTGGAAATCTCCAATTTCTCAAAGTAATGAATTTCTCGAGAAATGGTTTCACTGGTAGCTTGCCGGACTCTATGAATAATTGCCATAACCTAATGGTCTTAGATTTCAGTCATAATTCCATCTCCGGTGATCTATCTGCCTGGATTTTCAAACTCCGTTCACAAAACATCACTTTTTCTGAGAGCAAGCAAAGTATTTCTAGCCCAGTATCTGCTTTTTCTGGCAAATTGCTTCCGAATCTTCAAGTTTTGGATCTGTCTCACAATGGATTCTCTGGTGTTATTACACCTGACATAATGATTTTCAGTAGTCTGCAGTTCCTCAACCTGTCCAGAAATTCTCTCGCTGGCCATATTCCCGAAACCGTTGGAGGGATGACAGCTCTGGACACCCTTGATTTGAGTCGGAATCAGCTAAACGGAAGTATACCGGAGGAAATTGGTGGAGCAGTGTCGTTGAAAGTTCTTAGACTAGAGAAGAACTATCTTGGTGGGTCAATTCCTTATTCGATTGGCAATTGCTCTTCTCTAGAAACATTAATCTTATCGGAAAACAAGTTAAATGGTCAGATACCTTCATCATTGGGGAAACTAACTGATCTTCAAATCGTCGACTTGTCTTTTAACAACATCAACGGAACACTGCCGAAGCAGCTAGCGAATCTCCCCAACCTACTTTTGTTTAACATATCTCACAACAACATCCATGGTGAACTGCCAGCAGGTGGCTTTTTCAACACCATTTCCCCGACCTCGGTCTCTGGCAATCCTTCTCTATGTGGCTCTGTTGTTAAAAAATCTTGCCCTGCCGTCCTTCCCAAACCTATTGTTCTCGACCCCGGCTCCTCTTCTGACTCCACCTCCAATCCTCTACCTCCTGGTCTTGCTCACAAGAAAGCTATCCTCAGCATATCAGCCCTCATTGCCATTGGAGCAGCTGCTCTGATTGTGATTGGCGTAATAGCAATCACTGTCCTTAATCTCCGTGTTCGCACATCCACATCTCAGTCTGCAGCACCCCTCACTTTATCGACTCAGGATGACTTTCTTCATTCCTCCACTACAGATGCCAATTCCGGCAAGCTCGTCATGTTTTCAGGCAAACCAGACTTCAGTACAGGTGCTCATGCTCTCCTCAACAAAGATTGTGAACTTGGGAGGGGAGGGTTTGGGACGGTCTACAAGACTCTTCTTCGGGATGGGTATGCAGTTGCAATCAAGAAGCTCACTGTCTCTAGTCTCGTCAAATCCCAAGATGAATTTGAAAAGGAAGTTAAAAAATTGGGGAAAGTCCGGCACCCAAATCTCGTCACCCTTCAAGGTTATTACTGGACTCCATCATTGCAGCTCCTTATATCTGAATTTGTCTCCGGAGGAAGCTTGTACAAGCATCTCCACGAAGGATTGGATGGAAACGTCCTCTCATGGGATGACAGATTCAACATAATACTAGGGACAGCAAAAAGCTTGGCTTACTTGCACCAAGTGAACATAATCCACTACAACATCAAGTCAAGCAATGTCCTGATTAACAGCTCTGGTGAGCCCAAGGTTGGAGATTTTGGCCTAGCTAGGCTGTTGCCAATGCTTGACAGATATGTTTTAAGCAGCAAGATTCAGAGCGCGCTTGGCTATATGGCACCAGAATTCGCCTGCAAAACAGTGAAGATAACTGAAAAATGTGATGTTTACGGGTTTGGGGTTTTGGTCCTGGAAGTGGTCGCTGGGAAAAGACCGGTCGAGTATATGGAAGATGATGTGGTCATTCTCTGTGACATGGTTAGAGGAGCATTGGAAGATGGCAGGGTGGAAGAATGCGTGGACCGGAGGCTCTTGGGGAACTTTCCATCCGAGGAAGCAATACCCGTCATAAAATTAGGCTTGATCTGCACGTCTCAAGTGCCATCAAACCGGCCGGATATGGGGGAGGTAGTAAATATATTGGAGCTGATTCGATGCCCTTCGGAGAGTAACGAGGAGTCGGGATGA 2907 45.65 MMRNLGEVLVLLLLAPVFASSLNLSLNDDVLGLIVFKADIQDPKGKLASWSEDDYTPCSWTGVKCNPRSNRVIELDLAGFSLSGRLGRGLLQLQFLRKLSLSNNNLTGKVGPNIARIDNLREIDLGDNGFSGSLPSDFFDQCGSLRAISLAGNKFSGKIPDSLASCAGLAALNLSTNQFSGSLPSGIWSLSGLRTLDLSNNLLEGNIQKEIQGLNNLRVINLSKNLFSGQVLDGIGSCLLLRSIDLSENLFSGNLPDAFRQLSLCNNLRLQKNSFVGEVPEWIEEMKSLEMLDLSANSFSGQIPNSVGNLQFLKVMNFSRNGFTGSLPDSMNNCHNLMVLDFSHNSISGDLSAWIFKLRSQNITFSESKQSISSPVSAFSGKLLPNLQVLDLSHNGFSGVITPDIMIFSSLQFLNLSRNSLAGHIPETVGGMTALDTLDLSRNQLNGSIPEEIGGAVSLKVLRLEKNYLGGSIPYSIGNCSSLETLILSENKLNGQIPSSLGKLTDLQIVDLSFNNINGTLPKQLANLPNLLLFNISHNNIHGELPAGGFFNTISPTSVSGNPSLCGSVVKKSCPAVLPKPIVLDPGSSSDSTSNPLPPGLAHKKAILSISALIAIGAAALIVIGVIAITVLNLRVRTSTSQSAAPLTLSTQDDFLHSSTTDANSGKLVMFSGKPDFSTGAHALLNKDCELGRGGFGTVYKTLLRDGYAVAIKKLTVSSLVKSQDEFEKEVKKLGKVRHPNLVTLQGYYWTPSLQLLISEFVSGGSLYKHLHEGLDGNVLSWDDRFNIILGTAKSLAYLHQVNIIHYNIKSSNVLINSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVAGKRPVEYMEDDVVILCDMVRGALEDGRVEECVDRRLLGNFPSEEAIPVIKLGLICTSQVPSNRPDMGEVVNILELIRCPSESNEESG 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1487957 1491113 - Bma016462.1 Bma03g00194 78867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00194 968 SMART LRR_sd22_2 432 455 - -
Bma03g00194 968 SMART LRR_sd22_2 286 312 - -
Bma03g00194 968 SMART LRR_sd22_2 93 122 - -
Bma03g00194 968 SMART LRR_sd22_2 190 216 - -
Bma03g00194 968 SMART LRR_sd22_2 334 353 - -
Bma03g00194 968 SMART LRR_sd22_2 504 530 - -
Bma03g00194 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Bma03g00194 968 Pfam Protein tyrosine and serine/threonine kinase 687 950 IPR001245 GO:0004672|GO:0006468
Bma03g00194 968 CDD STKc_IRAK 691 957 - -
Bma03g00194 968 Gene3D Ribonuclease Inhibitor 280 364 IPR032675 -
Bma03g00194 968 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
Bma03g00194 968 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Bma03g00194 968 Gene3D Ribonuclease Inhibitor 365 466 IPR032675 -
Bma03g00194 968 SUPERFAMILY L domain-like 47 228 - -
Bma03g00194 968 SUPERFAMILY RNI-like 172 546 - -
Bma03g00194 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 3 964 - -
Bma03g00194 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 964 - -
Bma03g00194 968 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Bma03g00194 968 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Bma03g00194 968 Gene3D Transferase(Phosphotransferase) domain 1 762 967 - -
Bma03g00194 968 Gene3D Ribonuclease Inhibitor 467 577 IPR032675 -
Bma03g00194 968 Gene3D Phosphorylase Kinase; domain 1 678 761 - -
Bma03g00194 968 SMART LRR_typ_2 528 552 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 214 238 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 384 403 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 190 213 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 432 456 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 117 141 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 286 310 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 408 431 IPR003591 -
Bma03g00194 968 SMART LRR_typ_2 504 527 IPR003591 -
Bma03g00194 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00194 968 SUPERFAMILY Protein kinase-like (PK-like) 688 958 IPR011009 -
Bma03g00194 968 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00194 Bma-Chr3:1487957 Bma04g00995 Bma-Chr4:16141302 0 dispersed
Bma12g00116 Bma-Chr12:1769373 Bma03g00194 Bma-Chr3:1487957 3.02E-09 transposed
Bma03g00194 Bma-Chr3:1487957 Bma08g01055 Bma-Chr8:49657352 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66384 PF07714 PK_Tyr_Ser-Thr 2.10E-41 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00194 - - qlo:115955578 1384.01