Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00200 ATGGTTGCTGGGTCTTTTTCTGCTCTCTTCCTCCTCCTCCTCCTCGCTGTTCTCAATCTCTACGTTTGCCGCTCTTTTGCTGATTACGGAGGGTGGGAGAGCGCTCATGCCACATTCTATGGCGGTGGTGATGCATCCGGCACAATGGGAGGTGCATGTGGGTATGGCAATTTATATGGCCAAGGATACGGGACTAATACAGCGGCACTGAGCACTGCTCTGTTCAACAATGGCTTGAGCTGCGGAGCCTGTTACGAAATAACCTGCCGAGATGACCCACAATATTGCACTGGGGGTACCATCACCGTCACAGCCACAAATTTCTGCCCTCCAAACAGTGCACTGGCTAATGATAATGGTGGCTGGTGTAATCCTCCGCTTCAGCACTTCGACTTGTCCGAGCCGGTTTTCTTGCAAATCGCTCAATATCGGGCCGGCATTGTTCCAGTCTCCTTTAGAAGAGTCCCCTGTACGAAGAAAGGAGGAATAAGGTTCACTGTGAACGGCCACTCTTACTTCAACCTGGTGTTGATCACAAACGTAGGAGGAGCAGGAGATGTTCATTCTGTATCAATCAAAGGCTCGAAAACTGGCTGGCAGAGCATGTCGAGAAACTGGGGTCAGAATTGGCAGAGCAACTCCAACCTCAACGGCCAGACTCTGTCCTTTCAAGTGACAACAAGCGACGGCCGGACTCTCACCAGCTACGACGTCTCGCCGGCTAACTGGCAATTCGGGCAAACATTTGAGGGAAGCCAATTTTAG 765 51.37 MVAGSFSALFLLLLLAVLNLYVCRSFADYGGWESAHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGACYEITCRDDPQYCTGGTITVTATNFCPPNSALANDNGGWCNPPLQHFDLSEPVFLQIAQYRAGIVPVSFRRVPCTKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQSMSRNWGQNWQSNSNLNGQTLSFQVTTSDGRTLTSYDVSPANWQFGQTFEGSQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1535352 1536275 + Bma016468.1 Bma03g00200 78873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00200 254 PANTHER EXPANSIN 8 254 - -
Bma03g00200 254 Pfam Lytic transglycolase 67 152 IPR009009 -
Bma03g00200 254 SUPERFAMILY Barwin-like endoglucanases 14 180 IPR036908 -
Bma03g00200 254 SMART dpbb_1 67 152 IPR007112 -
Bma03g00200 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Bma03g00200 254 Gene3D - 21 158 IPR036908 -
Bma03g00200 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Bma03g00200 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Bma03g00200 254 PANTHER EXPANSIN-A15 8 254 IPR002963 GO:0009664
Bma03g00200 254 Gene3D - 160 254 IPR036749 -
Bma03g00200 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Bma03g00200 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Bma03g00200 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Bma03g00200 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00200 Bma-Chr3:1535352 Bma15g00149 Bma-Chr15:1543263 2.20E-137 dispersed
Bma14g01168 Bma-Chr14:17053252 Bma03g00200 Bma-Chr3:1535352 1.01E-88 dispersed
Bma14g01653 Bma-Chr14:35040012 Bma03g00200 Bma-Chr3:1535352 5.51E-122 dispersed
Bma01g01063 Bma-Chr1:11133773 Bma03g00200 Bma-Chr3:1535352 2.41E-54 transposed
Bma12g00887 Bma-Chr12:40166936 Bma03g00200 Bma-Chr3:1535352 1.29E-62 transposed
Bma03g00191 Bma-Chr3:1466600 Bma03g00200 Bma-Chr3:1535352 4.10E-113 wgd
Bma03g00200 Bma-Chr3:1535352 Bma08g01058 Bma-Chr8:49674715 5.39E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00200 - K20628 nnu:104593779 442.195