Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00208 ATGTCTAAAGAAAGGGAGAGCTTCGAAGATATAGGAAAGAAAGTAAAGAGAAGTACAGATGCCTCTTCTCAAATCGGAATCAGAAGGCTCATTCCGGGCCGTCCTGGAGGCATCAACATCATCACACCATGTGCAGCATGTAAGCTGTTAAGACGAAGGTGTGCGCAAGAATGCCCTTTTTCTCCATATTTCTCTCCCCACGAACCCCACAAGTTTGCTTCTGTCCATAAAGTGTTTGGAGCCAGCAATGTCTCAAAGCTACTTATGGAGGTGGATGAGGGCCAAAGAGCAGATGCTGCTAATAGTCTTGTGTACGAAGCCAACGTGAGGCTGAGAGACCCAGTCTACGGCTGCATGGGGGCTATCTTAAATTTGCAGCAGCAAGTTCAATCTTTGCAAGCAGAGCTCAACGCAATAAGGGAAGAGATACTGAAATACAATTACGGGGACCCTACTGTTACAATGCCATCTTCTCACGTCTCTTTGCTCACTTCTTGCGGGGCTGTTTCAGTCATCGTGCCACCTCTTCCACCGCCGCTTCTACCGACCCCAACACCACGGCCGCCACTTTTGTCTTCTGATTCCTCCTCTGGCAGCTACCCTCCACCGACCACTGCTGCAAACTACAGCTCCATTACAAGCGATCAAAACGTTACCTACTTTGAGTGA 669 48.73 MSKERESFEDIGKKVKRSTDASSQIGIRRLIPGRPGGINIITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVDEGQRADAANSLVYEANVRLRDPVYGCMGAILNLQQQVQSLQAELNAIREEILKYNYGDPTVTMPSSHVSLLTSCGAVSVIVPPLPPPLLPTPTPRPPLLSSDSSSGSYPPPTTAANYSSITSDQNVTYFE 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1569533 1570436 + Bma016476.1 Bma03g00208 78881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00208 222 Pfam Lateral organ boundaries (LOB) domain 43 139 IPR004883 -
Bma03g00208 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 222 - -
Bma03g00208 222 MobiDBLite consensus disorder prediction 180 222 - -
Bma03g00208 222 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Bma03g00208 222 Coils Coil 122 142 - -
Bma03g00208 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 26 222 - -
Bma03g00208 222 MobiDBLite consensus disorder prediction 190 222 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00208 Bma08g01069 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00208 Bma-Chr3:1569533 Bma08g01029 Bma-Chr8:49439546 2.13E-47 dispersed
Bma03g00188 Bma-Chr3:1449246 Bma03g00208 Bma-Chr3:1569533 7.47E-77 wgd
Bma03g00208 Bma-Chr3:1569533 Bma08g01069 Bma-Chr8:49714152 6.37E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56967 PF03195 LOB 2.50E-40 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00208 - - nnu:104597202 266.544