Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00230 ATGGGTGGAAATTCACCGTGTGCCTCCTGCAAGCTTTTGAGAAGACGATGTGCAAAGGAATGCATCTTCGCCCCTTATTTTCCTTCTGATGATCCTCATAAGTTTGCCATTGTTCACAAGGTTTTCGGAGCCAGCAACATCAGCAAAATGTTGCAGGAGCTTCCAATTCATCAGCGAGCAGATGCAGTGAGCAGTCTGGTTTATGAAGCTAATGCAAGAATGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTATCTTCAAAGCCAGGTTTCTCAGCTTCAAATGGAACTTGCCGTGGCTCAGGCGGAGATTCTATGCATCCAAATGCAACATGAGCCAATGGCTGTGTTGCCAAATACGTCGCCATTAAACCCAGATGACAAGTCTTATAATTTTCTCCCCAATAATCTCCCCCAGTACCTCAATTTTGCTTCCTCCACTAATGTAATCCACGACTCTCTCAAAAGGGAGAGCCTTTTCAGCCACGACATGGTTTCTTAG 507 45.56 MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARMRDPVYGCVGAISYLQSQVSQLQMELAVAQAEILCIQMQHEPMAVLPNTSPLNPDDKSYNFLPNNLPQYLNFASSTNVIHDSLKRESLFSHDMVS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1749341 1750012 - Bma016500.1 Bma03g00230 78903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00230 168 Coils Coil 85 105 - -
Bma03g00230 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bma03g00230 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bma03g00230 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
Bma03g00230 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00230 Bma-Chr3:1749341 Bma14g00879 Bma-Chr14:9901680 8.42E-60 dispersed
Bma13g00843 Bma-Chr13:35667622 Bma03g00230 Bma-Chr3:1749341 1.78E-44 dispersed
Bma14g02066 Bma-Chr14:44027832 Bma03g00230 Bma-Chr3:1749341 2.00E-37 dispersed
Bma15g01117 Bma-Chr15:44210380 Bma03g00230 Bma-Chr3:1749341 2.50E-11 dispersed
Bma03g00230 Bma-Chr3:1749341 Bma07g01581 Bma-Chr7:51123892 4.35E-27 wgd
Bma03g00230 Bma-Chr3:1749341 Bma08g01029 Bma-Chr8:49439546 4.58E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56968 PF03195 LOB 2.40E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00230 - - qsu:112026683 282.337