Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00233 ATGGCTTCCCATGCCCCTAATTTGGAGTGCCGAATGTACGAGGCCAGGTATCCAGAGGTTGATATGGCCGTGATGATTCAGGTTAAAAACATTGCGGATATGGGAGCCTATGTCTCTCTCCTCGAGTACAATAACATCGAGGGTATGATTCTTTTCTCCGAGCTGTCTCGCCGTAGGATCCGTAGTGTTAGCAGTCTAATCAAGGTGGGTCGTATCGAGCCCGTCATGGTCCTCAGGGTCGACAGGGAGAAAGGATACATTGATCTGAGCAAGAGGAGAGTCTCTGAGGAAGATATCCAGGCTTGTGAAGAAAGGTATAACAAGAGCAAGCTCGTTCACTCTATTATGCGCCATGTTGCTGAGACGCTGAATATAGATTTAGAGGACCTATATATCCACATTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCCTTCAAGATAATTGTCACTGATCCTGATTCAGTTCTGAACTCACTCACTCGCGAAGTTAAGGAGACTGGTCCTGGTGGGCAGGAGGTGACCAAGGTAATTCCTGCTATTACAGAGGAGGTCAAAGAAGCACTGGTAAAGAATATTAGGAGAAGAATGACTCCCCAACCTCAAAAAGTTCGAGCTGATATCGAGATGAAATGTTTTCAGTTTGACGGCGTCCTTCACATTAAGGAAGCAATGAGGAGGGCTGAAGCTGCTGGCAATGATGATTGTCCTGTTAAAATTAAGCTGGTTGCTCCTCCTCTATATGTTCTTACTACTCAAACTCTTGACAAGGAACAAGGAATAACAGTCCTTAATAAAGCAATCATCGCTTGTACTGAGGCAATCGAAAAACACAAGGGAAAACTTGTGGTGAAGGAAGCACCTAGAGCTGTGAGCGAGCGGGATGATAAGTTACTTGCTGAACACATGGCGAAGCTCCGACAGGACAACGAGGAGATAAGTGGAGATGAAGATAGCGAAGAAGAAGACGACACCGGGATGGGAGAAGTTGATGTGGAAAATGCAGGTCCTGGGATAACGGAG 1032 46.22 MASHAPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDREKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEDLYIHIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKETGPGGQEVTKVIPAITEEVKEALVKNIRRRMTPQPQKVRADIEMKCFQFDGVLHIKEAMRRAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLNKAIIACTEAIEKHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEDDTGMGEVDVENAGPGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1761894 1764030 + Bma030967 Bma03g00233 78906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00233 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Bma03g00233 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Bma03g00233 344 MobiDBLite consensus disorder prediction 307 344 - -
Bma03g00233 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Bma03g00233 344 SMART S1_6 19 92 IPR022967 -
Bma03g00233 344 PANTHER BNAC04G04870D PROTEIN 5 343 - -
Bma03g00233 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 198 IPR024054 -
Bma03g00233 344 Coils Coil 306 326 - -
Bma03g00233 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Bma03g00233 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 343 IPR011488 GO:0003723|GO:0003743
Bma03g00233 344 SUPERFAMILY Nucleic acid-binding proteins 11 92 IPR012340 -
Bma03g00233 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Bma03g00233 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Bma03g00233 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Bma03g00233 344 Gene3D - 6 94 IPR012340 -
Bma03g00233 344 MobiDBLite consensus disorder prediction 316 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00233 Bma-Chr3:1761894 Bma08g01028 Bma-Chr8:49429046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00233 K03237 - csv:101209681 619.002