Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00241 ATGTCCCGTGCAGTTGCGGCACCAAACTCTTCTCTGTTTTCACCTTCCAAGATTTCTTCTTCTTTTTTGTACGACTCATCCTCCGCTTCTTCTAATTCTCCGGGGAACAACGTCTATGAATCATCGCCATCTGGATCGGTGTCGACGTCTTCGGCCTTTCCGATGCCACTGCGGCGAACGAAGCAGATGAGAGACGCCCCAAGTACTATTCTTTCCAGGAAGAGGCCTGCGAGGATAGCGGTGCCGGTTGTTTCTGTGGATTTCGGAGGCGATGATGATCTTATTGACGAGAGATTCGATCTGGTAGAGGTGGAAGAGTTAGGGTACTCCGTTTATTGTAAGAAGGGAGGATCAAGAACTACAATGGAGGATCGATACTCCGCCGTAGTCAATAAGCGGGAAGATTCTGGACAGGCTTCCTTCTTTGGTGTTTTTGACGGCCATGGAGGAACAAAAGCTGCAGAATTTGCTGCAAAGGAAATAGGCAAGAACATCCTATCTCGAGCAGCTAGAAAAAGCGAAAAAGAACTCGAGCAAGCAATTAAAGAATGCTACTTAATTACAGACAAACAGTTCTCGGAAGAGGGTGGGAGCGGCGGTACTTGTTGCGTAACTGCATTGATACGAGACGGCGATCTGGCAGTCTCCAACGTTGGCGACTGTCGTGGTGGTTATGTAGATTGCCGGAATGGCGTCTGGAGAGTGCAAGGATCACTCGCAGTGTCGAGAGGGATCGGCGATAGTCACCTCAAGCAGTGGGTCATATCAGAGCCAGAGACTACAGTCATCGAGATCAGCCATGATTGCGAGTTCTTAATCCTCGCTTCTGATGGTGTTAGTGACGAGGAAGCAGTAAACCTAGTCCGTCCTCTATGCGTGGGTATTGAAGAGCCGAAACTCCTCTCTGCTTGCAAGAAGATAGCTGCGTTATCAATGGCGAGAGGCTCAGCTGACGATATTAGCGTGATGATCATCAAATTGAGTAGCTTCTTTTAG 996 48.69 MSRAVAAPNSSLFSPSKISSSFLYDSSSASSNSPGNNVYESSPSGSVSTSSAFPMPLRRTKQMRDAPSTILSRKRPARIAVPVVSVDFGGDDDLIDERFDLVEVEELGYSVYCKKGGSRTTMEDRYSAVVNKREDSGQASFFGVFDGHGGTKAAEFAAKEIGKNILSRAARKSEKELEQAIKECYLITDKQFSEEGGSGGTCCVTALIRDGDLAVSNVGDCRGGYVDCRNGVWRVQGSLAVSRGIGDSHLKQWVISEPETTVIEISHDCEFLILASDGVSDEEAVNLVRPLCVGIEEPKLLSACKKIAALSMARGSADDISVMIIKLSSFF 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1838588 1839996 - Bma016515.1 Bma03g00241 78914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00241 331 Gene3D - 96 226 IPR036457 -
Bma03g00241 331 Coils Coil 163 183 - -
Bma03g00241 331 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169
Bma03g00241 331 ProSiteProfiles PPM-type phosphatase domain profile. 108 327 IPR001932 -
Bma03g00241 331 MobiDBLite consensus disorder prediction 1 56 - -
Bma03g00241 331 SMART PP2C_4 101 325 IPR001932 -
Bma03g00241 331 MobiDBLite consensus disorder prediction 1 68 - -
Bma03g00241 331 SMART PP2C_SIG_2 125 327 IPR001932 -
Bma03g00241 331 Gene3D - 227 330 IPR036457 -
Bma03g00241 331 Pfam Protein phosphatase 2C 113 222 IPR001932 -
Bma03g00241 331 Pfam Protein phosphatase 2C 223 320 IPR001932 -
Bma03g00241 331 PANTHER PROTEIN PHOSPHATASE 2C 3 222 IPR015655 GO:0004722|GO:0006470
Bma03g00241 331 PANTHER PROTEIN PHOSPHATASE 2C 223 330 IPR015655 GO:0004722|GO:0006470
Bma03g00241 331 SUPERFAMILY PP2C-like 106 328 IPR036457 -
Bma03g00241 331 CDD PP2Cc 112 327 IPR001932 -
Bma03g00241 331 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 222 - -
Bma03g00241 331 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 223 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00324 Bma-Chr2:4405883 Bma03g00241 Bma-Chr3:1838588 6.85E-63 dispersed
Bma03g00241 Bma-Chr3:1838588 Bma04g00107 Bma-Chr4:839888 7.85E-32 dispersed
Bma03g00241 Bma-Chr3:1838588 Bma01g02182 Bma-Chr1:78713791 6.90E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00241 K17506 - csin:114291970 317.39