Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00245 ATGTGTAGAGATTCCAAGAATAAACTTGGTTCTTTGAGTTCGGTCATGGAAGGTAAGTTTCAGAAGTATGTTTCCTCCGAATGCTCTCTTTTGCTTGAATTAGCGGCCTCGGATGATGTAGAATCCTTCAGAAAAGAAGTAGAAGAAAGGGGTTTCGATGTTGACGAACCAAGCTTTTGGTACGGAAGAGTGATTGGACCAAAAAGAATGGGACTTGATGAGCGGACTCCGCTTATGATTGCGGCCATGTTTGGAAACGCTAAGGTTGTGAATTACATAATCGAAACTGGAAAAGCCGATGTTAATCGAGCTTGTGGTTCCGATGGAGTCACTGCTCTTCACTGTGCTATATCTGGTGGCTCAGTTTCTTCTGTGGACACTGTTAAACTCTTACTCAGTGCATCTTCCGATGTTGATCGACTCAACGCCTACGGACTGAAACCAATCGATTTAATCTGCATGGATCTTAAATCGCCAATAAATTCAAGAAGGAAGGTGTTGGAGATGTTGCTGAAAGGTGATGATTTGGAAGAAGGTGAATTGAGCCTCAAACTAGAAGCAGACAAGCTGAAGATAACAATGCCCCAATTATCAAAAGGATTTGAGAAGAAAGAATTTCCTATTGACATATCGCTGCCAGATATGAACTTTGGACTATATGGTACTGATGATTTTAGGATGTATACTTTCAAGGTGAAGCCTTGTTCAAGGGCATACTCTCATGATTGGACAGAGTGCCCTTTTGTTCATCCTGGTGAAAACGCTCGCCGGAGAGATCCCCGTAAGTATCCGTATAGCTGTGTTCCCTGCCCAGATTTTCGTAAAGGAAATTGTGAGAAAGGTGATTCATGTGAATATGCACATGGCGTGTTTGAATCATGGCTTCACCCTGCTCAATATCGAACCCGTCTTTGCAAGGACGAGACTGGATGTGCAAGGAAGGTCTGCTTTTTTGCTCACAAACCTGAAGAATTACGACCTGTGTATGCCTCTACCGGCTCGGCCATGCCCTCTCACCGGCCTCTTTCAGCCAGTGCAATCGATATGGCCATGCTGAGCCCATCGACTCTTGGCGCTTCATCTTTGCCATTGCCTGCCACTTCAACCCCACCATTGTCGCCATTGTCAGCTGCTTCATCGCCCAAAAATGGGATTTTGTGGCAGAACAAATTTAATCTCACACCTCCTGTTCTTCAGCTTCCTGGCAGTCGCTTGAAAACAGCTACGAGTGCTCGAGATCTTAATTTAGAGATGGAATTGCTCGGGATTAAAACTTCCAGCCAACAACAGAATCAGCAGTTAATTGATGAGATATCTCGGCTTTCCTCTCCTACATATTGGAGTAAAGATCGGGGCAGAATTGGAGATCTGAAACCAACTAACCTCGATGATGTATATGGTTCGTTAGAATCGTGCTTGTTGTCTCAATTTGAGGGCCTTCCACTGAATCCGTTGTCCCCTTCTCCATTACACTCATCCACGGGGCTTCATATGCATCAAAATTTGAACCAACTTCGTTCGAATTACCCAACCAATCTCACATCTCCATCAATGAGGAAGCCCTCATCTTTTGGCCTTGACTCAGGTTCATCGGCGGCAGTTATGAGTTCAAGGTCCGCTGCTTTTGCTAAGCGTAGTCAGAGTTTCATTGATCGATCAGCCATCACTCGTCTTCCTGACTTTTCGGGTGCTTCTATTTCTGCGGCTAATGTATCTTCCAATCTTTCTGGTTGGGGTTCACCTGATGGAAAATTGAATTGGGCTGTTAAAGGAGACGAACTCAACAAGTTGAAGAAGTCTGCCTCTTTTGGGATGAGAAACTCTACTGCAGGAATAACCAATGCCACCTTGACCACTGCCTCGGCTTATGAGCCTGATGTCTCGTGGGTTAATACTTTGGTGAAAGACGTACCTCCTGAGAATCGGCAATTCAACCTCGATGAAGGGATTCACGAGGCACTACCTTCTTGGGCGGAGCAGCTGTACATAGAGCATGAGCAAGTAGTGGCATAA 2013 45.11 MCRDSKNKLGSLSSVMEGKFQKYVSSECSLLLELAASDDVESFRKEVEERGFDVDEPSFWYGRVIGPKRMGLDERTPLMIAAMFGNAKVVNYIIETGKADVNRACGSDGVTALHCAISGGSVSSVDTVKLLLSASSDVDRLNAYGLKPIDLICMDLKSPINSRRKVLEMLLKGDDLEEGELSLKLEADKLKITMPQLSKGFEKKEFPIDISLPDMNFGLYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPDFRKGNCEKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEELRPVYASTGSAMPSHRPLSASAIDMAMLSPSTLGASSLPLPATSTPPLSPLSAASSPKNGILWQNKFNLTPPVLQLPGSRLKTATSARDLNLEMELLGIKTSSQQQNQQLIDEISRLSSPTYWSKDRGRIGDLKPTNLDDVYGSLESCLLSQFEGLPLNPLSPSPLHSSTGLHMHQNLNQLRSNYPTNLTSPSMRKPSSFGLDSGSSAAVMSSRSAAFAKRSQSFIDRSAITRLPDFSGASISAANVSSNLSGWGSPDGKLNWAVKGDELNKLKKSASFGMRNSTAGITNATLTTASAYEPDVSWVNTLVKDVPPENRQFNLDEGIHEALPSWAEQLYIEHEQVVA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1885483 1887495 - Bma016519.1 Bma03g00245 78918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00245 670 SMART ANK_2a 108 140 IPR002110 GO:0005515
Bma03g00245 670 SMART ANK_2a 73 103 IPR002110 GO:0005515
Bma03g00245 670 ProSiteProfiles Ankyrin repeat region circular profile. 108 139 - -
Bma03g00245 670 Gene3D - 265 327 - -
Bma03g00245 670 Gene3D - 22 112 IPR036770 -
Bma03g00245 670 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Bma03g00245 670 SMART c3hfinal6 299 322 IPR000571 GO:0046872
Bma03g00245 670 ProSiteProfiles Ankyrin repeat profile. 73 97 IPR002110 GO:0005515
Bma03g00245 670 Gene3D - 113 173 IPR036770 -
Bma03g00245 670 Pfam Ankyrin repeats (3 copies) 68 139 IPR002110 GO:0005515
Bma03g00245 670 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Bma03g00245 670 PANTHER UNKEMPT FAMILY MEMBER 19 668 IPR045234 -
Bma03g00245 670 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 668 - -
Bma03g00245 670 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Bma03g00245 670 ProSiteProfiles Ankyrin repeat region circular profile. 73 97 - -
Bma03g00245 670 SUPERFAMILY Ankyrin repeat 23 154 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00245 Bma08g01081 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00245 Bma-Chr3:1885483 Bma13g00133 Bma-Chr13:1338580 1.58E-140 dispersed
Bma03g00176 Bma-Chr3:1352233 Bma03g00245 Bma-Chr3:1885483 0 wgd
Bma03g00245 Bma-Chr3:1885483 Bma07g00064 Bma-Chr7:1482967 8.55E-20 wgd
Bma03g00245 Bma-Chr3:1885483 Bma08g01081 Bma-Chr8:49860477 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56970 PF12796 Ank_2 2.50E-09 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00245 - - zju:107404189 853.203