Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00250 ATGACGAAACCACCGTCCTCTATCTCCGCCGTTTCCGTCGCCGTCGCTGTCATTATCACCGTCTTATCAAATTTCGTCTACCCAATTCATGCCCTTGGATCCGGCTCTACCCTGGCAGTTAGCTATGGCTCCGGCACAGTTTGCGGCATCGTCGCCGAGCAGGCAAGGCAGCGTATAGAGTGCTACCATAACGGCCAAACCATTTTTATCGAGCCCAATATCTCTTTCTCCTCCATTTCCGGTGGACGAAACTTCTTTTGTGGCCTAAGAACAGGAGGCTACAGTCTGCACTGCTGGGACTACAACGTTTCCGATTCCACCTTTTCCCGAAAAAGAATTTACTTCAGCGACACTGTTTTATTGGATGATATTGCTATCGGAGACAGCCAAATTTGCGCTACGGTAGTGGATACCGGCAGTCTAATTTGCTGGCGAGAAAGTAACGCGTCGATCGAATTTCCATCTGATCAATTCGCTTCAATCTCATCTGGGTTTGGTTTTTCTTGTGGGATTTTGAGGAATGGGTCTGTTCGTTGTTGGGGAAGCAATTCGATTGCCAATCAGATTGAGAATGGGTTCAGGAACATGTCCATGTTGAACATTGTAGCGGGAGGCTCTCATGCCTGCGGAGTTGATATTTCGGGGATTTTGATTTGCAGAGGAAATAACGATACTGGGCAATTGAATACTCCTTCGAATTCAGAAATGGATTTCACTGAATTGGCTCTCGGAGAGAGCCACAGTTGTGGAATTCGACGACAGAATCGATCGGTTGTTTGTTGGGGAGGCGGAGGACAGTTTTCTTCCGATATTTCGTTCGAACGAATTGTTTCTGGCTCGAATTTCTCTTGTGGGCTGACGACCCGTAATTTCTCCGTTATGTGTTGGGGACCAGGATGGCGGAATAGCTCCGGTGCTAATTTGGCTCCGGAGCTTCCATTACCGAAAATTCTTCCCGGTCCCTGTGTTCTTTCTTCCTGTTCTGAATGCGGAATATTTCCTCTTTCTCAAACTCTCTGTTCTGGTTCTGGAAATGTGTGTCAACGTTGCGTGTCTCAATTTTCAATTCCGCCGCCGCCGTTGCCGCCCATTTCACCTCCTTCATCTTCATCTCCGTCCAGTTCTTTATCAAAAGGTTTGCTTGCTTTCGCCATTGTCGGTTCAGTCGGAGCTTTTGCCGGTATCTGCACTGTGGTTTACTGCTTGTGGACCGGCGTTTGTTTTGGGCATAAGAAAATACACAATTCAGTTCAACCCAGAATAACACGAGAGGCGAGCTCTAATGGCCGAGTGACGTCAAACACCAACAACAGCCCTCCCTCGAGGTCGTCAACGATTAAACGGCAAGGCTCTAGAATCATGAGACGTCAAAGAAGCGGAACATCATCCAAACACGCAGAAAGATCAGAGGAATTTTCATTTGCAGAGCTCGCAACAGCAACCAACGGCTTCTCCATGGAAAACAAGCTCGGGGCGGGAAGCTTCGGCGTCGTGTACAGAGGCAAGTTACCAGACGGGAGAGAGGTCGCCATTAAAAGAGGCGAAACTGGGACGAAAAAGAAGAAATTCCAAGAGAAAGAAAGCGCATTTGATTCAGAATTAGCCTTCTTATCGCGCCTCCATCATAAACACTTGGTTAGGCTAGTCGGGTACTGCGAGGAGAAAGACGAGAGACTCTTGGTTTATGATTACATGAAAAACGGAGCTCTTTACGATCATCTTCACGACAAGAACAACACAGAGAAGAGCAGCAGCGCGGTAAATTCGTGGAAAATGAGGATCAAAATTGCTTTAGATGCTGCTAGAGGAATCGAGTATCTTCACAATTACGCAGTCCCCCCCATAATTCACAGGGACATAAAATCCTCCAATATTTTGCTCGACGCCACTTGGACAGCCCGAGTGTCGGATTTCGGACTATCATTAATGAGTCCCGAATCGGTACATGACTACCAGCCGATGAAAGCAGCCGGAACAGTGGGCTACATTGATCCAGAGTACTATGGTCTAAATGTGTTGACAGCAAAGAGTGACGTCTATGGACTTGGAGTAGTTCTGTTAGAGCTTTTAACGGGGAAGCGAGCTATATTCAAAAACGGAGAAAATGGAGGAACGCCGGTGAGTTTGGTGGATTTTGCCGTACCGGCGATCATGATGGGTGAAATGTCGAAGGTGCTAGACCCAAGAGTTGGATCACCGGAGCTAAACGAATCGGAAGCGGTGGAGCTTATGGGTTATACAGCAATGCATTGCGTTAACTTGGAAGGGAAAGAGAGACCGAGTATGACTGACATTGTGGCCAATTTGGAGCGCGCACTGGCTCTTTGTGATGAGAGCCACGGTAACATTTCCAGCGACGGGATTTCCATTGTTTCAGAGTAG 2382 47.65 MTKPPSSISAVSVAVAVIITVLSNFVYPIHALGSGSTLAVSYGSGTVCGIVAEQARQRIECYHNGQTIFIEPNISFSSISGGRNFFCGLRTGGYSLHCWDYNVSDSTFSRKRIYFSDTVLLDDIAIGDSQICATVVDTGSLICWRESNASIEFPSDQFASISSGFGFSCGILRNGSVRCWGSNSIANQIENGFRNMSMLNIVAGGSHACGVDISGILICRGNNDTGQLNTPSNSEMDFTELALGESHSCGIRRQNRSVVCWGGGGQFSSDISFERIVSGSNFSCGLTTRNFSVMCWGPGWRNSSGANLAPELPLPKILPGPCVLSSCSECGIFPLSQTLCSGSGNVCQRCVSQFSIPPPPLPPISPPSSSSPSSSLSKGLLAFAIVGSVGAFAGICTVVYCLWTGVCFGHKKIHNSVQPRITREASSNGRVTSNTNNSPPSRSSTIKRQGSRIMRRQRSGTSSKHAERSEEFSFAELATATNGFSMENKLGAGSFGVVYRGKLPDGREVAIKRGETGTKKKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYDYMKNGALYDHLHDKNNTEKSSSAVNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDATWTARVSDFGLSLMSPESVHDYQPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNGENGGTPVSLVDFAVPAIMMGEMSKVLDPRVGSPELNESEAVELMGYTAMHCVNLEGKERPSMTDIVANLERALALCDESHGNISSDGISIVSE 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1937533 1939925 + Bma016524.1 Bma03g00250 78923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00250 793 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 2 790 IPR044815 GO:0004674
Bma03g00250 793 Gene3D - 13 189 IPR009091 -
Bma03g00250 793 ProSitePatterns Protein kinases ATP-binding region signature. 490 512 IPR017441 GO:0005524
Bma03g00250 793 Gene3D Phosphorylase Kinase; domain 1 444 564 - -
Bma03g00250 793 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 2 790 - -
Bma03g00250 793 SMART serkin_6 484 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00250 793 Pfam Protein kinase domain 485 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00250 793 CDD STKc_IRAK 490 771 - -
Bma03g00250 793 Pfam Regulator of chromosome condensation (RCC1) repeat 159 184 - -
Bma03g00250 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Bma03g00250 793 SUPERFAMILY RCC1/BLIP-II 43 306 IPR009091 -
Bma03g00250 793 Gene3D Transferase(Phosphotransferase) domain 1 565 785 - -
Bma03g00250 793 ProSiteProfiles Protein kinase domain profile. 484 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma03g00250 793 SUPERFAMILY Protein kinase-like (PK-like) 465 769 IPR011009 -
Bma03g00250 793 MobiDBLite consensus disorder prediction 419 448 - -
Bma03g00250 793 Gene3D - 190 329 IPR009091 -
Bma03g00250 793 MobiDBLite consensus disorder prediction 419 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02645 Bma-Chr1:83948507 Bma03g00250 Bma-Chr3:1937533 1.59E-136 dispersed
Bma03g00250 Bma-Chr3:1937533 Bma03g01561 Bma-Chr3:51976003 9.76E-70 dispersed
Bma03g00250 Bma-Chr3:1937533 Bma08g01023 Bma-Chr8:49338283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66386 PF00069 Pkinase 5.20E-44 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00250 - - bhj:120081574 1140.18