Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00258 ATGGCAACTACTTATCGAGATCGGACGACGGAGTTTCTATCTTTATCTGAGACGTTGAAGAAGATCGGACCAATCAAAATAGTTAGTCAAGCTGAAAACGAGACCTCTCTTTCTAAACCTTCCCGACCTGTCTCTTCCAAGTCAGAATTCAACAGGAAGGCTGCGCAAATTTCTTTTGGAATGCATGAGACCTCTCATAAGATTACTCGACTTGCGCAATTGGCAAAAAGATCATCAATGTTTGATGACCCAATTGTGGAAATACAGGAATTGACCGTTTTCATAAAGAACGATATAACAGCTTTGAATGTAGCTCTCTCTGATCTACAAACTATTCAAAACATGGAAATGGCCGATGGGAGCTATTCTGAGGATAAAGTTGTTCACTCAACAGCTGTTTGTGATGACTTGAAAAACAGACTCATGGGGGTCACTAAACATCTTAAAAATGTGTTAACAACAAGAACAGAGAACATAAAAGCAAATGAGAGTAGGAAGCAGATATTCTCCGCAACTGTAACTAAAGAAAATGCTTCTCAAAATCATGCAAAGACAGTGTCTCAGCCACCACCGTGGTTAATTTCATCAAATACATCTGAGAGTTCTCAACCACCAACATTGCCAGTAAATGGAGCCCAAGTTGGTAGTCAACTGAGGAGAAGGTTAGCTGTCGAAAACACTCCATCTCAGCATATGGAAATGTCAATGTTACAGCAGGTGGTTCCAAGACAGGAAATTTATTCAGAAAGTCGTGGGATTGCTCTTCATAATGTTGAGTCTACGATTTCAGAACTCAGTGGAATCTTTACGCATTTGGCGACAATGGTTGCTCATCAAGGGGAACTGGCTATCAGGATTGACGATAACATGGATGAATCGTTGGCTAATGTTGAAGGTGCTCGCAGCTCTCTATTAAGGCATCTCAACCGAATATCGTCTAATAGGTGGCTTATGATCAAAATATTTGGGATAGTATACCAAGCCAACCAGGGGAAATTCCATTCTGAGGCTGACAAGAACCGGTGGAAGGCAATTGCTGAGCTCCTTCCAAATGAAGTGCCCGCCATTGAAAAAAGGAGAGGGAAGAAAGATCAAGAAAAGAAGCCATCTATCAATGTCGTTCAAGGTCCAAAACCAGGGAAGCCAACTGACCTTTCAAGGATGCGACAAATTCTCCTGAAATTGAAGCACAACACACCCCCCCACTTGAAGCCTACGCCTCCTCCCGCACTCGCCGAGAAGGATCCTGCATCAGCTGATCCTCCATCGAATGCTACAGTTTCGTTAACTCCTCAAGCAGTAGTTGTCACTTAG 1314 42.69 MATTYRDRTTEFLSLSETLKKIGPIKIVSQAENETSLSKPSRPVSSKSEFNRKAAQISFGMHETSHKITRLAQLAKRSSMFDDPIVEIQELTVFIKNDITALNVALSDLQTIQNMEMADGSYSEDKVVHSTAVCDDLKNRLMGVTKHLKNVLTTRTENIKANESRKQIFSATVTKENASQNHAKTVSQPPPWLISSNTSESSQPPTLPVNGAQVGSQLRRRLAVENTPSQHMEMSMLQQVVPRQEIYSESRGIALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSSLLRHLNRISSNRWLMIKIFGIVYQANQGKFHSEADKNRWKAIAELLPNEVPAIEKRRGKKDQEKKPSINVVQGPKPGKPTDLSRMRQILLKLKHNTPPHLKPTPPPALAEKDPASADPPSNATVSLTPQAVVVT 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1980011 1985019 - Bma016532.2 Bma03g00258 78931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00258 437 MobiDBLite consensus disorder prediction 357 437 - -
Bma03g00258 437 MobiDBLite consensus disorder prediction 421 437 - -
Bma03g00258 437 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma03g00258 437 MobiDBLite consensus disorder prediction 175 211 - -
Bma03g00258 437 Gene3D - 45 300 - -
Bma03g00258 437 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Bma03g00258 437 PANTHER SYNTAXIN 4 325 IPR045242 -
Bma03g00258 437 SMART tSNARE_6 240 307 IPR000727 -
Bma03g00258 437 MobiDBLite consensus disorder prediction 401 415 - -
Bma03g00258 437 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 3 21 IPR021538 -
Bma03g00258 437 CDD SNARE_syntaxin5 248 325 - -
Bma03g00258 437 PANTHER SYNTAXIN-31 4 325 - -
Bma03g00258 437 Pfam SNARE domain 282 325 IPR000727 -
Bma03g00258 437 SUPERFAMILY t-snare proteins 48 300 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00258 Bma-Chr3:1980011 Bma07g00365 Bma-Chr7:4561929 3.03E-33 dispersed
Bma03g00258 Bma-Chr3:1980011 Bma02g00044 Bma-Chr2:405104 3.50E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00258 K08490 - jre:108991917 480.33