Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00261 ATGGAGGGTAAGGAAGAAGACGTGAGATTGGGAGCCAATAAGTTCCCAGAGAGGCAACCCATAGGGACGGCCGCGCAGAGCCAAGATGATACCAAGGACTACAAGGAGCCACCACCGGCGCCGCTTTTTGAGCCCGGCGAGCTAACGTCGTGGTCTTTTTACAGAGCTGGAATAGCAGAGTTCATTGCCACTTTTTTGTTTTTGTACGTCACGATTCTAACCGTGATGGGCGTCGTTCGAACGAAGCAAACTACAGGCAACTTGTGCGGAACTGTCGGAATTCAGGGAATCGCGTGGGCTTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACAGCCGGAATATCAGGTGGTCATATAAATCCGGCGGTGACGTTCGGGCTGTTTCTGGCGAGGAAGCTTTCGTTAACTCGGGCGATATTCTACATGGTGATGCAGTGTCTTGGAGCGATTTGTGGTGCTGGCGTAGTGAAGGGGTTTCAGCCGAAGTTCTACGGGAATTTGAATGGTGGAGTCAACTACGTAAGCGCTGGCTACACTAAAGGCGACGGCCTTGGCGCAGAGATTGTCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGATGCCAAACGAAGCGCCAGAGACTCCCATGTTCCTATTTTGGCTCCTCTGCCAATTGGATTTGCTGTGTTCTTGGTGCACTTAGCAACAATTCCCATAACAGGCACGGGCATAAATCCAGCCAGGAGTTTAGGCGCATCTATAATCTTTAACAAAGAGCTAGGCTGGCGTGACCATTGGATTTTCTGGGTGGGACCCTTCATTGGTGCTGCACTTGCAGCTCTTTACCATCAGGTGGTGATCAGAGCCATGCCTTTTAAATCTAAGTGA 879 51.08 MEGKEEDVRLGANKFPERQPIGTAAQSQDDTKDYKEPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYVTILTVMGVVRTKQTTGNLCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKFYGNLNGGVNYVSAGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGASIIFNKELGWRDHWIFWVGPFIGAALAALYHQVVIRAMPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1993417 1994558 + Bma016534.1 Bma03g00261 78934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00261 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Bma03g00261 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Bma03g00261 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma03g00261 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Bma03g00261 292 MobiDBLite consensus disorder prediction 1 39 - -
Bma03g00261 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Bma03g00261 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Bma03g00261 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00261 Bma-Chr3:1993417 Bma12g00064 Bma-Chr12:1219290 1.44E-175 dispersed
Bma03g00261 Bma-Chr3:1993417 Bma05g00835 Bma-Chr5:45726737 8.77E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00261 K09872 - csv:101215145 540.036