Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00262 ATGGCGCCAAGCGAAAGCACAGTTTTGCAATTTACCCCTTCTTCGACAAGCTTGTCAGCGAAGGTTCATCCTTTGGTTATTTTCAACATCTGTGACTGTTACGTTCGACGCCCTGACCAAGCTGAGCGGGTAATCGGAACTCTTCTTGGATCTGTTTTACCCGACGGTACCGTCGATATCCGAAATTCGTATGCCGTTCCTCACAACGAGTCCTCCGATCAGGTTGCCTTGGATATCGATTATCACCATAATATGTTAATTTCCCACCAAAAAGTGAACCCAAAGGAAGCCATTGTTGGATGGTACTCAACTGGCCTGGGAGTTACTGCTGGCAGTTCGTTGATTCATGATTTCTATTCAAGAGAAGTTCCCAACCCTATTCATTTGACTGTTGACACCGGCTTCAGGAATGGTGAGGGTACCATCAAAGCTTATGTCAAGGTCAATTTGTCTTTGGGAGACAGACAGCTTGCAGCCCAATTTCAAGAAATTCCTCTAGATCATCGTATGGTTGAAGCTGAGCGAGTTGGATATGATATTCTTAAGTCAACAATGGTTGAAAAACTACCCAATGATTTGGAAGGGATGGAAGTCTCAATGGAACGTCTACTATGTCTAATTGATGATATCTACAAATACGTGGACAATGCTGTGGAAGGTCATGTTGTACCCGACAACAGCATAGGAAGATTTATAGCGGATACAGTTGCATCCCTGCCAAAAATGTCGCCATCATCTTTTGATAAACTAATGAATGATAACCTTCAGGATCATTTGGTGTTGCTTTATTTGTCAAGTATCACCAGGACGCAGCTTAGCTTGGCTGAAAAGTTGAATACAGCAGCTCAGAACCTGTAA 858 43.24 MAPSESTVLQFTPSSTSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESSDQVALDIDYHHNMLISHQKVNPKEAIVGWYSTGLGVTAGSSLIHDFYSREVPNPIHLTVDTGFRNGEGTIKAYVKVNLSLGDRQLAAQFQEIPLDHRMVEAERVGYDILKSTMVEKLPNDLEGMEVSMERLLCLIDDIYKYVDNAVEGHVVPDNSIGRFIADTVASLPKMSPSSFDKLMNDNLQDHLVLLYLSSITRTQLSLAEKLNTAAQNL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1996404 1998672 + Bma016535.1 Bma03g00262 78935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00262 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Bma03g00262 285 Gene3D Cytidine Deaminase, domain 2 8 185 - -
Bma03g00262 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma03g00262 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma03g00262 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Bma03g00262 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 9 285 - -
Bma03g00262 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma03g00262 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma03g00262 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 9 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00262 Bma-Chr3:1996404 Bma10g00324 Bma-Chr10:2986537 6.53E-29 dispersed
Bma03g00262 Bma-Chr3:1996404 Bma04g01314 Bma-Chr4:44577193 3.45E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00262 K03249 - rcu:8270438 501.516