Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00273 | ATGGAAGCCATACCCCAATCCCACGTCATTCAGGTGGAAGAAGGGTCCCCTCGGGGATCTGTCATCGTCTCCGGCCCCGGTGACGTTTCAGGTAATATGGAACACAGGCGTTCGAGGGAGATCGAGATCGAGATTGTTGGAGGGGTGCTGAACAAAGGGAGGGGATCTTCTGCGTCGGATTGTTCAGTGGAGGTGGATCCGGATCTGGATTGGCCTGTGCCGGAGACCAGGTTACACTTGGGAAAAGTGGAGAGGGACTGTAGGATTTGCCATCTGAGTTTAAATGCAAGCCACCCTGAATCTGGAATTCCAATGGAATTGGGGTGCTCTTGTAAGAATGATTTAGCTGCTGCCCACAAACACTGCGCGGAGGCTTGGTTCAAAATCAAGGGTAACAAAATCTGTGAAATCTGTGGTTCGATTGCCAGGAATGTGTCGGAAGCTAATGCACCAGACTTGACACTGCATCAGAACGTTGCAAACGAAAATGCAACAATGGTGGCCGTGGCTCCTGCAGGACAGGTGCGGCGCTTCTGGCATGGCCATAGGTTCCTGAACATTCTCCTAGCCACCATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTTCCCTCGTGA | 627 | 52.31 | MEAIPQSHVIQVEEGSPRGSVIVSGPGDVSGNMEHRRSREIEIEIVGGVLNKGRGSSASDCSVEVDPDLDWPVPETRLHLGKVERDCRICHLSLNASHPESGIPMELGCSCKNDLAAAHKHCAEAWFKIKGNKICEICGSIARNVSEANAPDLTLHQNVANENATMVAVAPAGQVRRFWHGHRFLNILLATMVFAFVISWLFHFNVPS | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2052787 | 2053897 | + | Bma016546.1 | Bma03g00273 | 78946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00273 | 208 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 79 | 145 | IPR011016 | GO:0008270 | |
Bma03g00273 | 208 | SUPERFAMILY | RING/U-box | 84 | 141 | - | - | |
Bma03g00273 | 208 | PANTHER | OS01G0850200 PROTEIN | 40 | 208 | - | - | |
Bma03g00273 | 208 | SMART | ringv_2 | 86 | 139 | IPR011016 | GO:0008270 | |
Bma03g00273 | 208 | PANTHER | ZINC FINGER, RING-CH-TYPE | 40 | 208 | - | - | |
Bma03g00273 | 208 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 149 | IPR013083 | - | |
Bma03g00273 | 208 | CDD | RING_CH-C4HC3_MARCH | 87 | 139 | - | - | |
Bma03g00273 | 208 | Pfam | RING-variant domain | 87 | 138 | IPR011016 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00273 | Bma-Chr3:2052787 | Bma04g01270 | Bma-Chr4:38827084 | 1.90E-59 | dispersed | |
Bma05g00547 | Bma-Chr5:29860561 | Bma03g00273 | Bma-Chr3:2052787 | 4.41E-10 | dispersed | |
Bma03g00273 | Bma-Chr3:2052787 | Bma07g01561 | Bma-Chr7:51027637 | 3.78E-42 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00273 | - | - | zju:107413802 | 233.802 |