Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00273 ATGGAAGCCATACCCCAATCCCACGTCATTCAGGTGGAAGAAGGGTCCCCTCGGGGATCTGTCATCGTCTCCGGCCCCGGTGACGTTTCAGGTAATATGGAACACAGGCGTTCGAGGGAGATCGAGATCGAGATTGTTGGAGGGGTGCTGAACAAAGGGAGGGGATCTTCTGCGTCGGATTGTTCAGTGGAGGTGGATCCGGATCTGGATTGGCCTGTGCCGGAGACCAGGTTACACTTGGGAAAAGTGGAGAGGGACTGTAGGATTTGCCATCTGAGTTTAAATGCAAGCCACCCTGAATCTGGAATTCCAATGGAATTGGGGTGCTCTTGTAAGAATGATTTAGCTGCTGCCCACAAACACTGCGCGGAGGCTTGGTTCAAAATCAAGGGTAACAAAATCTGTGAAATCTGTGGTTCGATTGCCAGGAATGTGTCGGAAGCTAATGCACCAGACTTGACACTGCATCAGAACGTTGCAAACGAAAATGCAACAATGGTGGCCGTGGCTCCTGCAGGACAGGTGCGGCGCTTCTGGCATGGCCATAGGTTCCTGAACATTCTCCTAGCCACCATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTTCCCTCGTGA 627 52.31 MEAIPQSHVIQVEEGSPRGSVIVSGPGDVSGNMEHRRSREIEIEIVGGVLNKGRGSSASDCSVEVDPDLDWPVPETRLHLGKVERDCRICHLSLNASHPESGIPMELGCSCKNDLAAAHKHCAEAWFKIKGNKICEICGSIARNVSEANAPDLTLHQNVANENATMVAVAPAGQVRRFWHGHRFLNILLATMVFAFVISWLFHFNVPS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2052787 2053897 + Bma016546.1 Bma03g00273 78946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00273 208 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Bma03g00273 208 SUPERFAMILY RING/U-box 84 141 - -
Bma03g00273 208 PANTHER OS01G0850200 PROTEIN 40 208 - -
Bma03g00273 208 SMART ringv_2 86 139 IPR011016 GO:0008270
Bma03g00273 208 PANTHER ZINC FINGER, RING-CH-TYPE 40 208 - -
Bma03g00273 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
Bma03g00273 208 CDD RING_CH-C4HC3_MARCH 87 139 - -
Bma03g00273 208 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00273 Bma-Chr3:2052787 Bma04g01270 Bma-Chr4:38827084 1.90E-59 dispersed
Bma05g00547 Bma-Chr5:29860561 Bma03g00273 Bma-Chr3:2052787 4.41E-10 dispersed
Bma03g00273 Bma-Chr3:2052787 Bma07g01561 Bma-Chr7:51027637 3.78E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00273 - - zju:107413802 233.802