Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00284 ATGGCGAATCGATGGTGGACGGGTAACGTAGCCATGAGAGGCGTGAACCCCATGTCTTCATCTCCTTCGTTTCAGATGAGAAACGCCGAAGAAGAGAGTGGAGGACTGAACAGGTTTGCACCGAGGAGAGAGCAAGAGCTATTCATGGATTCTCACACCAACTCAACCACTACGAACAGTAGCACGAGCAACCCCAACTCCACGCCTCGTAAACAATGCCTCCAGGACGAAGTTAGCCGGGAAAATTATCGGGAAACTGAAGAACCAATCTCTGGCGGCGTTGAGATCGTCGAACTAGGTAGTACCAGTGGCAATCGCCGGCCTCGCGGGCGACCTCCAGGGTCCAAAAACAAGCCAAAACCACCAATCGTTGTCACTAAAGAAAGCCCAAATGCTCTCCGAAGCCACGTCTTGGAAATCAGCACGGGCAGTGACATTGTCGAGAGCATCTCCACCTTCGCCCAACGCCGCCACCGAGGAGTCTCCGTTCTAAGCGGCAGTGGCATTGTCACAAACGTCTCTTTCGGACAACCTGCTGCACCAAACGGAGTCATCACTCTCCCTGGCAGATTTGAGATTTTGTCTCTATCTGGTGCGTTTTTACCTGCCCCGGCTCCTCCTGGAGCCACTGGACTGACGGTGTATTTAGCCGGAGGGCAAGGTCAGGTGGTGGGTGGAACAGTGGTGGGTTCGCTCATTGCTTCTGGTCCAGTTATGGTGATCGCAGCCACGTTTACTAATGCCACTTATGAGCGATTGCCAATCGAAGATGAGCAGCCAAATGATGATCAGGCAGCCCAATTACAGACGCGATCAGTGTCTCAAAGCATGGGCGATCAACCTCTAATGGCCACCTACAATATGCCGCCTCATTTGATACCAAATGGGCAGATGCCTTCTGATGTTTTCTGGGTTTCTCCTCCTCGCCCCCCTCCCTCTTACTGA 945 52.91 MANRWWTGNVAMRGVNPMSSSPSFQMRNAEEESGGLNRFAPRREQELFMDSHTNSTTTNSSTSNPNSTPRKQCLQDEVSRENYRETEEPISGGVEIVELGSTSGNRRPRGRPPGSKNKPKPPIVVTKESPNALRSHVLEISTGSDIVESISTFAQRRHRGVSVLSGSGIVTNVSFGQPAAPNGVITLPGRFEILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGTVVGSLIASGPVMVIAATFTNATYERLPIEDEQPNDDQAAQLQTRSVSQSMGDQPLMATYNMPPHLIPNGQMPSDVFWVSPPRPPPSY 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2105603 2106547 + Bma016558.1 Bma03g00284 78957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00284 314 MobiDBLite consensus disorder prediction 254 278 - -
Bma03g00284 314 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Bma03g00284 314 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 258 - -
Bma03g00284 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 314 IPR014476 GO:0003680
Bma03g00284 314 MobiDBLite consensus disorder prediction 262 278 - -
Bma03g00284 314 MobiDBLite consensus disorder prediction 50 73 - -
Bma03g00284 314 MobiDBLite consensus disorder prediction 1 124 - -
Bma03g00284 314 MobiDBLite consensus disorder prediction 13 30 - -
Bma03g00284 314 ProSiteProfiles PPC domain profile profile. 130 268 IPR005175 -
Bma03g00284 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 314 - -
Bma03g00284 314 CDD DUF296 134 217 IPR005175 -
Bma03g00284 314 MobiDBLite consensus disorder prediction 74 88 - -
Bma03g00284 314 Gene3D - 133 264 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00284 Bma08g01008 CCT
Bma03g00284 Bma08g01108 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00284 Bma-Chr3:2105603 Bma04g00746 Bma-Chr4:8030831 1.08E-76 dispersed
Bma03g00140 Bma-Chr3:1061309 Bma03g00284 Bma-Chr3:2105603 7.27E-117 wgd
Bma03g00284 Bma-Chr3:2105603 Bma08g01108 Bma-Chr8:50062189 4.56E-94 wgd
Bma03g00284 Bma-Chr3:2105603 Bma08g01008 Bma-Chr8:49104811 6.37E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00284 - - qsu:112039774 372.474