Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00291 ATGGTTTTCTCACCAATACCAGTCTATTTGGATCCACCAAACTGGCAACAGCAAACAAATCATCAATCTGGAGTTGGCTGTGAAAACACTCCGCCGCCACCTTTACCACCACCTTTACCTGTTACTGGAGGTGGATCCGGTTCGATCAGGCCGAGTTCGATGGCTGATCGTGCCCGTCTAGCCAAGATGCCACAGCCGGAGGCTGCCCTAAAGTGCCCAAGATGCGAATCCACAAACACGAAGTTTTGTTACTACAATAATTACAACTCTTCTCAACCTCGCCATTTTTGCAAGAGCTGCAGGCGATACTGGACGAGAGGAGGTGCCCTGAGGAACGTCCCGGTTGGGGGTGGTAGCAGAAGGAACAAAAGAAGCAAAGCCGGAAATGGATCGAAATCTCCATTGATGGAGAAGAAAACTGCGTCAAGCTCTACTGCTACAGTCTCTTCAAGTAGCTGCACTTCTGATATGGTTGGCCATTTGATCCCTCCAGAATCATCGCAGCTGCAACTTTTTCCATATCATCATTTGAGTGATTATAGTATCGGGAATGTCGGCATGAGTTTCGCCGGAATCCAACCACCTACTGTTGGCGAAGATAGTGTTAGATTTCCGATCGCTACTGATTCAGGTGGTTCCGCCGGCGGCAGTGGTGATCCAATGTTTTCCTGTGCAATTACTGAAAATTGGAGATTACAACAAGTTCAGCAATTTCCTTTTCTATCAAATATGGAAAATTCAAATGGGTTATATGCGTTGGGGTGTTATAATGAAGGTGGCGCAGAACGACCCAATTATCAGCTTCATCGCTTTTCGAAGCCCTTGGCTTCTGGGGTTTCACGTTTGGTTACAGAGAAAATGGAGGAAAATCAAGGGTTTAATTTTCCGAGAAACTTTCTGGGTGTTCAAGGAAATGATCAATTCTGGGGAGGAAACAATGCCTGGAATGACCTTTCTGGTTTCAGTTCGTCATCCACCAGCCATCTCTAA 990 46.36 MVFSPIPVYLDPPNWQQQTNHQSGVGCENTPPPPLPPPLPVTGGGSGSIRPSSMADRARLAKMPQPEAALKCPRCESTNTKFCYYNNYNSSQPRHFCKSCRRYWTRGGALRNVPVGGGSRRNKRSKAGNGSKSPLMEKKTASSSTATVSSSSCTSDMVGHLIPPESSQLQLFPYHHLSDYSIGNVGMSFAGIQPPTVGEDSVRFPIATDSGGSAGGSGDPMFSCAITENWRLQQVQQFPFLSNMENSNGLYALGCYNEGGAERPNYQLHRFSKPLASGVSRLVTEKMEENQGFNFPRNFLGVQGNDQFWGGNNAWNDLSGFSSSSTSHL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2194811 2195925 - Bma016566.1 Bma03g00291 78964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00291 329 MobiDBLite consensus disorder prediction 12 27 - -
Bma03g00291 329 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Bma03g00291 329 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Bma03g00291 329 MobiDBLite consensus disorder prediction 111 150 - -
Bma03g00291 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 326 IPR045174 GO:0003700|GO:0006355
Bma03g00291 329 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Bma03g00291 329 MobiDBLite consensus disorder prediction 12 52 - -
Bma03g00291 329 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 326 - -
Bma03g00291 329 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00291 Bma-Chr3:2194811 Bma04g01404 Bma-Chr4:48718106 5.24E-70 dispersed
Bma01g01875 Bma-Chr1:68859855 Bma03g00291 Bma-Chr3:2194811 8.71E-54 wgd
Bma14g00500 Bma-Chr14:5623454 Bma03g00291 Bma-Chr3:2194811 3.27E-46 wgd
Bma03g00291 Bma-Chr3:2194811 Bma07g01538 Bma-Chr7:50903739 7.04E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56977 PF02701 zf-Dof 9.30E-33 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00291 - - vvi:100258172 365.155