Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g00300 | ATGCTGTTCTTGCCGCGCGTCCTAGACGCTTCCATAACAGCGATGAAGCTTGCACTGCTCAGACCCTTCCATGGAGTTGCGTCATCAGCGTGTGAAGTTCAGTCCTTGCCGATTAACTCTCTCAGATTTTGTTCTCAGAACCTTCGCCTTCTCCTTTCTTCCTGCGAAGATTGCAAGTCTCTGCTCCGAATCCACGGCTATTTGGTAGTTTCAGGATTGGAACAACATCAAACCGTAGCGCCCCATCTCATAAATTCTTATTCTTTGTTTAGGGAGTGTGATTTGACTCGCTTTGTGTTTAATTCTGGTCGAACCCCAAGTGTTTGCGTTTACAATTCCGTCATTAGAGCTTATACTAGACTAAAAAGGTACGAAGAAGCTCTTGAAATTTACCTTTACATGTTGGATATAAGTTTGGAGCCGGATAAATATACCTTTACCTTTGCTCTGAAAGCTTGTACTGCTACCTTGAACGTACAAGAGGGTGCATCGATTCGGCGTGAAATTTCTGGTAGAAAGCTAGACTATGATGTGTTTATCGGAACTGGTCTGATTGATATGTATTCCAAAATGGGTGACCGAAGGAATGCAATGAATGTGTTTGAGAATATGCCTAACCGGGATGTTGCGGCTTGGAATGCCATAATTGGATGTCTATCACAATGCTGTAACCCTGGGGAGGCCATGGAATTTTTTCGAATGATGCAAATGGAGCGTGTGGAACCCGATTTAGTGACCTTATCGAACTTGGTTCCAGCGGTCTCGAAATTGGCAAATGTTGATTTTTGTAGGACTATTCATGCTTACGTGGTTAGAAGAGCCTTTTGCTCTGAATTTTCAAATGGCCTGATTGATATGTACTCCAAGTGTGGGGATATAAAGGCTGCTCGACTGGTTTTCAACCTGATGCCTGTTCGGAATGATGTCTCATGGGGAACAATGATGGCAGGGTATGTATATAACGGATTTTTCCTCGAGGTTTTGTGTTTATTTAATCATATGAAGAAGAATAATCTTAGGTTGAATAAAATCTCTACTATCAACTCAATTCTGGCGGCTGGAGAGATGATAGATTTGGACACAGGAAGGAAGATTCATGATTGTGCTAAACAACAAGGTATCGATAAGGATATAACTATTGCCACTTCCGTTGTAGTAATGTATTTAAAGTGTGGAGAGCCTCAAAAAGCTAAAACATTATTTGAGAAACTTGAAGAGAAAGATGCAGTTGCCTGGTCTGCATTTGTTTCTGCTTGTGTTCAGTCTGGATATTATGAAGAGGCATTGTCACTGTTTCAAGATTTGCAAAATCAAAAACTGAAAATAGATTTAGCGACTCTGAAGAGTATCCTTTTGATATGTGCAGAGCTAAACCTTTTGCACATTGGCAAGGCCGTCCATTGCTTCTACATCAAGGCTTTTATTGACTCTGATGTTTCGACAGAAACAGCCATGGTGTCCATGTATGTTAAATGTAGATGCCTCTCTTTCGCGACAAATCTATTCAATAGCATCCTTTGTAAAGATGTTGTAACTTGGAATGCTTTGATAGTCATTAGGAATCATCCTTCAGCTCTTCAAATCTACCAAAAGAAGCTCTTGGAGTCTGGGCAGGTGACCCAAGAGGATATTGATAGGATACAGAATAAGGTCAATGCAATCCTGAACGAAGAATTCTTGGCCAGCAAAGATTATGTCCCCAAAAGAAGGGACTGGCTTTCAGCCTATTGGTCTGGATTTAAGTCACCCGAACAGCTTTCACGAGTTCGAAATACGGGGGTTAAACCAGAGATCTTGAAGAATGTGGGCAAAGCAATTACGGTACTTCCAGATACTTTTAAGCCTCACAGAGCAGTAAAAAAGGTTTATGAACAGAGAGCCCAAATGATTGAATCAGGGGAGGGGATTGATTGGGCAGTTGGAGAGGCACTTGCTTTTGCCACTTTACTAGTGGAAGGTAATCATGTTAGATTGAGTGGTCAGGATGTTGAAAGAGGTACATTTAGTCATCGGCATTCTGTTATTCACGATCAAGAAACAGGGGAGAAATATTGTCCTCTAGATCATGTAATCATGAATCAAGACGAGGAAATGTTTACTGTTAGCAACAGTTCACTCTCGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCAAATTCATTGGTAATTTGGGAAGCTCAGTTTGGCGATTTTGCAAATGGGGCACAAGTTATATTTGATCAGTTCGTGTGCAGTGGGGAATCAAAGTGGTTGCGACAGACTGGGCTTGTCGTTTTGCTTCCACATGGTTATGATGGGCAGGGCCCTGAACATTCCAGTGCGCGATTGGAGCGTTTTCTTCAGATGAGTGACGACAATCCTTTTGTTATCCCCGAGATGGAGCCAACTCTTAGGAAGCAAATTCAGGAATCCAACTGGCAAGTTGTGAATGTTACAACTCCCGCAAACTATTTCCATGTCTTGCGACGTCAGATACACAGAGAATTTCGAAAGCCTTTAATTGTGATGGCTCCCAAAAACCTGTTGCGTCACAAGGATTGTAGATCAAATCTATCTGAGTTTGATGACGTCGAAGGGCACCCAGGTTTTGACAAACAAGGAACCAGATTTAAACGTCTCATCAAGGATCAGAATTATCATTCTGATCGCGAAGAGGGCATCAGACGTTTAATACTCTGCTCTGGAAAGATTTATTATGAGCTTGATGACGAGAGGAAAAAGGTTGATGGAAAGGACATTGCAATATGCAGGGTCGAACAGCTTTGTCCCTTCCCGTATGATCTCATCCAAAGAGAGCTAAATCGATATCCAAATGCCGAGGTTGTTTGGTGCCAAGAAGAGCCAATGAACATGGGAGCTTATAGCTATATCTATCCTCGGCTAGGCACGGCCATGAAAGCACTAGGCAGAGGAACAATAGAAGACGTGAAGTACATTGGCCGTGCTCCATCAGCCGCTACTGCTACTGGTTTCTATCAAGCTCATGTCAAAGAACAAACTGAGCTTCCATTTCTGGCTGTGATTTTGTTGCAGTTTGGGTTTGCAGGAATGTCCATTATTTGTAAGTGTGCTTTAAACCAAGGAATGAGTCAACATGTCTTGGTCGTTTATCGTAACGCCGTTGCCACCTTTGTGTTTGCTCCTTTCGCCCTTGTACTTGAAAGGAAAATAAGGCCAAAGATGACGTATTCCATCCTTTTGAAGATCTTGTTGCTGGGTTTGTTGGAGCCAGTGATCGATCAGAATTTGTATTACACTGGTATGAAGTATACAACAGCAACTTTCACAGCTGCCATGACCAATGTTCTTCCTGCTTTTGCATTCTTAATGGCTTGGGCTTTGAGGCTTGAGAAGGTTGACATAAGGAGGCTTCACAGCCAGGCAAAGATAATAGGAACTGTAGTGACAGTAGGAGGAGCGATGCTTATGACTTCAATCAGAGGGCCTAATTTGAATCTTCCATGGACAAAGCAAGATCAAAACAATCATAATAACACTTCTAGCGTACCCAACAATCAAGATCCTATCAAAGGTGCTTTAATGATCTCAGCTGGCTGTATTTCCTGGTCTGGTTTTATCATTCTCCAAGCAATTACGCTAAAATCGTACCCGGCAGTGCTTTCATTAACATCCTGGATTTGCTTAATGGGTATGATAGAAGGATCAGTGCTGGCTTTGGCAATCGAATGGAAGAATCCTGCAGCTTGGTCAATACACTTGAACACTACACTTTTAACAGCTCTCTACGGCGGGATAGTATGTTCAGGAATTGCATACTATGTCCAAGGAGTGGTAATGAAGAAAAGAGGACCTGTTTTTGTGACAGCCTTCAGCCCACTTTCCATGGTTATTGTTGCAGTAATGGGCTCTTTCATTTTGTCTGAGATAGTATACTTGGGAAGGGCAATTGGAGCAATTGTGATAGTGTTTGGATTGTATCTCGTTTTGTGGGGAAAGAGCAAGGATCACCTTCCTTCCAACACTGGAAGCGAAAGAGTAAGACCGTCGGATCAAGAAATGGGCGATCCGGATGAATCGGAGAAGGCTTCGAATCAAGAATTTGTAGCCGTTGATGTTGGTAGTGCTGGAAGAGTTTGA | 4113 | 42.38 | MLFLPRVLDASITAMKLALLRPFHGVASSACEVQSLPINSLRFCSQNLRLLLSSCEDCKSLLRIHGYLVVSGLEQHQTVAPHLINSYSLFRECDLTRFVFNSGRTPSVCVYNSVIRAYTRLKRYEEALEIYLYMLDISLEPDKYTFTFALKACTATLNVQEGASIRREISGRKLDYDVFIGTGLIDMYSKMGDRRNAMNVFENMPNRDVAAWNAIIGCLSQCCNPGEAMEFFRMMQMERVEPDLVTLSNLVPAVSKLANVDFCRTIHAYVVRRAFCSEFSNGLIDMYSKCGDIKAARLVFNLMPVRNDVSWGTMMAGYVYNGFFLEVLCLFNHMKKNNLRLNKISTINSILAAGEMIDLDTGRKIHDCAKQQGIDKDITIATSVVVMYLKCGEPQKAKTLFEKLEEKDAVAWSAFVSACVQSGYYEEALSLFQDLQNQKLKIDLATLKSILLICAELNLLHIGKAVHCFYIKAFIDSDVSTETAMVSMYVKCRCLSFATNLFNSILCKDVVTWNALIVIRNHPSALQIYQKKLLESGQVTQEDIDRIQNKVNAILNEEFLASKDYVPKRRDWLSAYWSGFKSPEQLSRVRNTGVKPEILKNVGKAITVLPDTFKPHRAVKKVYEQRAQMIESGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVIHDQETGEKYCPLDHVIMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVIWEAQFGDFANGAQVIFDQFVCSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMEPTLRKQIQESNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDCRSNLSEFDDVEGHPGFDKQGTRFKRLIKDQNYHSDREEGIRRLILCSGKIYYELDDERKKVDGKDIAICRVEQLCPFPYDLIQRELNRYPNAEVVWCQEEPMNMGAYSYIYPRLGTAMKALGRGTIEDVKYIGRAPSAATATGFYQAHVKEQTELPFLAVILLQFGFAGMSIICKCALNQGMSQHVLVVYRNAVATFVFAPFALVLERKIRPKMTYSILLKILLLGLLEPVIDQNLYYTGMKYTTATFTAAMTNVLPAFAFLMAWALRLEKVDIRRLHSQAKIIGTVVTVGGAMLMTSIRGPNLNLPWTKQDQNNHNNTSSVPNNQDPIKGALMISAGCISWSGFIILQAITLKSYPAVLSLTSWICLMGMIEGSVLALAIEWKNPAAWSIHLNTTLLTALYGGIVCSGIAYYVQGVVMKKRGPVFVTAFSPLSMVIVAVMGSFILSEIVYLGRAIGAIVIVFGLYLVLWGKSKDHLPSNTGSERVRPSDQEMGDPDESEKASNQEFVAVDVGSAGRV | 1370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2240766 | 2255215 | + | Bma016575.1 | Bma03g00300 | 78973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g00300 | 1370 | Pfam | Transketolase, pyrimidine binding domain | 635 | 850 | IPR005475 | - | |
Bma03g00300 | 1370 | SMART | Transket_pyr_3 | 636 | 849 | IPR005475 | - | |
Bma03g00300 | 1370 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE | 515 | 1007 | IPR011603 | GO:0004591|GO:0006099|GO:0030976 | |
Bma03g00300 | 1370 | Gene3D | - | 867 | 1012 | IPR042179 | - | |
Bma03g00300 | 1370 | MobiDBLite | consensus disorder prediction | 1340 | 1356 | - | - | |
Bma03g00300 | 1370 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 307 | 341 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat family | 106 | 153 | IPR002885 | - | |
Bma03g00300 | 1370 | MobiDBLite | consensus disorder prediction | 1329 | 1370 | - | - | |
Bma03g00300 | 1370 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | IPR002885 | - | |
Bma03g00300 | 1370 | PANTHER | 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE | 515 | 1007 | - | - | |
Bma03g00300 | 1370 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 1042 | 1148 | - | - | |
Bma03g00300 | 1370 | Pfam | 2-oxoglutarate dehydrogenase C-terminal | 871 | 1007 | IPR031717 | - | |
Bma03g00300 | 1370 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 1240 | 1326 | - | - | |
Bma03g00300 | 1370 | Gene3D | Tetratricopeptide repeat domain | 71 | 166 | IPR011990 | GO:0005515 | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 309 | 338 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 211 | 238 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 281 | 305 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 382 | 407 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 183 | 208 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | PPR repeat | 410 | 437 | IPR002885 | - | |
Bma03g00300 | 1370 | Pfam | EamA-like transporter family | 1010 | 1148 | IPR000620 | GO:0016020|GO:0016021 | |
Bma03g00300 | 1370 | Pfam | EamA-like transporter family | 1182 | 1321 | IPR000620 | GO:0016020|GO:0016021 | |
Bma03g00300 | 1370 | Gene3D | Tetratricopeptide repeat domain | 277 | 356 | IPR011990 | GO:0005515 | |
Bma03g00300 | 1370 | Gene3D | Tetratricopeptide repeat domain | 357 | 461 | IPR011990 | GO:0005515 | |
Bma03g00300 | 1370 | Gene3D | Tetratricopeptide repeat domain | 167 | 268 | IPR011990 | GO:0005515 | |
Bma03g00300 | 1370 | SUPERFAMILY | Thiamin diphosphate-binding fold (THDP-binding) | 619 | 855 | IPR029061 | - | |
Bma03g00300 | 1370 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 208 | 242 | IPR002885 | - | |
Bma03g00300 | 1370 | Gene3D | - | 592 | 864 | - | - | |
Bma03g00300 | 1370 | TIGRFAM | PPR: pentatricopeptide repeat domain | 110 | 142 | IPR002885 | - | |
Bma03g00300 | 1370 | TIGRFAM | PPR: pentatricopeptide repeat domain | 309 | 342 | IPR002885 | - | |
Bma03g00300 | 1370 | TIGRFAM | PPR: pentatricopeptide repeat domain | 410 | 443 | IPR002885 | - | |
Bma03g00300 | 1370 | TIGRFAM | PPR: pentatricopeptide repeat domain | 211 | 243 | IPR002885 | - | |
Bma03g00300 | 1370 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 107 | 141 | IPR002885 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g00300 | Bma08g00990 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01889 | Bma-Chr1:69604153 | Bma03g00300 | Bma-Chr3:2240766 | 2.56E-119 | dispersed | |
Bma03g00300 | Bma-Chr3:2240766 | Bma04g01450 | Bma-Chr4:49702076 | 4.75E-108 | dispersed | |
Bma08g00990 | Bma-Chr8:48988274 | Bma03g00300 | Bma-Chr3:2240766 | 0 | transposed | |
Bma03g00300 | Bma-Chr3:2240766 | Bma08g00989 | Bma-Chr8:48983945 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g00300 | K00164 | - | sind:105172198 | 935.25 |