Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00300 ATGCTGTTCTTGCCGCGCGTCCTAGACGCTTCCATAACAGCGATGAAGCTTGCACTGCTCAGACCCTTCCATGGAGTTGCGTCATCAGCGTGTGAAGTTCAGTCCTTGCCGATTAACTCTCTCAGATTTTGTTCTCAGAACCTTCGCCTTCTCCTTTCTTCCTGCGAAGATTGCAAGTCTCTGCTCCGAATCCACGGCTATTTGGTAGTTTCAGGATTGGAACAACATCAAACCGTAGCGCCCCATCTCATAAATTCTTATTCTTTGTTTAGGGAGTGTGATTTGACTCGCTTTGTGTTTAATTCTGGTCGAACCCCAAGTGTTTGCGTTTACAATTCCGTCATTAGAGCTTATACTAGACTAAAAAGGTACGAAGAAGCTCTTGAAATTTACCTTTACATGTTGGATATAAGTTTGGAGCCGGATAAATATACCTTTACCTTTGCTCTGAAAGCTTGTACTGCTACCTTGAACGTACAAGAGGGTGCATCGATTCGGCGTGAAATTTCTGGTAGAAAGCTAGACTATGATGTGTTTATCGGAACTGGTCTGATTGATATGTATTCCAAAATGGGTGACCGAAGGAATGCAATGAATGTGTTTGAGAATATGCCTAACCGGGATGTTGCGGCTTGGAATGCCATAATTGGATGTCTATCACAATGCTGTAACCCTGGGGAGGCCATGGAATTTTTTCGAATGATGCAAATGGAGCGTGTGGAACCCGATTTAGTGACCTTATCGAACTTGGTTCCAGCGGTCTCGAAATTGGCAAATGTTGATTTTTGTAGGACTATTCATGCTTACGTGGTTAGAAGAGCCTTTTGCTCTGAATTTTCAAATGGCCTGATTGATATGTACTCCAAGTGTGGGGATATAAAGGCTGCTCGACTGGTTTTCAACCTGATGCCTGTTCGGAATGATGTCTCATGGGGAACAATGATGGCAGGGTATGTATATAACGGATTTTTCCTCGAGGTTTTGTGTTTATTTAATCATATGAAGAAGAATAATCTTAGGTTGAATAAAATCTCTACTATCAACTCAATTCTGGCGGCTGGAGAGATGATAGATTTGGACACAGGAAGGAAGATTCATGATTGTGCTAAACAACAAGGTATCGATAAGGATATAACTATTGCCACTTCCGTTGTAGTAATGTATTTAAAGTGTGGAGAGCCTCAAAAAGCTAAAACATTATTTGAGAAACTTGAAGAGAAAGATGCAGTTGCCTGGTCTGCATTTGTTTCTGCTTGTGTTCAGTCTGGATATTATGAAGAGGCATTGTCACTGTTTCAAGATTTGCAAAATCAAAAACTGAAAATAGATTTAGCGACTCTGAAGAGTATCCTTTTGATATGTGCAGAGCTAAACCTTTTGCACATTGGCAAGGCCGTCCATTGCTTCTACATCAAGGCTTTTATTGACTCTGATGTTTCGACAGAAACAGCCATGGTGTCCATGTATGTTAAATGTAGATGCCTCTCTTTCGCGACAAATCTATTCAATAGCATCCTTTGTAAAGATGTTGTAACTTGGAATGCTTTGATAGTCATTAGGAATCATCCTTCAGCTCTTCAAATCTACCAAAAGAAGCTCTTGGAGTCTGGGCAGGTGACCCAAGAGGATATTGATAGGATACAGAATAAGGTCAATGCAATCCTGAACGAAGAATTCTTGGCCAGCAAAGATTATGTCCCCAAAAGAAGGGACTGGCTTTCAGCCTATTGGTCTGGATTTAAGTCACCCGAACAGCTTTCACGAGTTCGAAATACGGGGGTTAAACCAGAGATCTTGAAGAATGTGGGCAAAGCAATTACGGTACTTCCAGATACTTTTAAGCCTCACAGAGCAGTAAAAAAGGTTTATGAACAGAGAGCCCAAATGATTGAATCAGGGGAGGGGATTGATTGGGCAGTTGGAGAGGCACTTGCTTTTGCCACTTTACTAGTGGAAGGTAATCATGTTAGATTGAGTGGTCAGGATGTTGAAAGAGGTACATTTAGTCATCGGCATTCTGTTATTCACGATCAAGAAACAGGGGAGAAATATTGTCCTCTAGATCATGTAATCATGAATCAAGACGAGGAAATGTTTACTGTTAGCAACAGTTCACTCTCGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCAAATTCATTGGTAATTTGGGAAGCTCAGTTTGGCGATTTTGCAAATGGGGCACAAGTTATATTTGATCAGTTCGTGTGCAGTGGGGAATCAAAGTGGTTGCGACAGACTGGGCTTGTCGTTTTGCTTCCACATGGTTATGATGGGCAGGGCCCTGAACATTCCAGTGCGCGATTGGAGCGTTTTCTTCAGATGAGTGACGACAATCCTTTTGTTATCCCCGAGATGGAGCCAACTCTTAGGAAGCAAATTCAGGAATCCAACTGGCAAGTTGTGAATGTTACAACTCCCGCAAACTATTTCCATGTCTTGCGACGTCAGATACACAGAGAATTTCGAAAGCCTTTAATTGTGATGGCTCCCAAAAACCTGTTGCGTCACAAGGATTGTAGATCAAATCTATCTGAGTTTGATGACGTCGAAGGGCACCCAGGTTTTGACAAACAAGGAACCAGATTTAAACGTCTCATCAAGGATCAGAATTATCATTCTGATCGCGAAGAGGGCATCAGACGTTTAATACTCTGCTCTGGAAAGATTTATTATGAGCTTGATGACGAGAGGAAAAAGGTTGATGGAAAGGACATTGCAATATGCAGGGTCGAACAGCTTTGTCCCTTCCCGTATGATCTCATCCAAAGAGAGCTAAATCGATATCCAAATGCCGAGGTTGTTTGGTGCCAAGAAGAGCCAATGAACATGGGAGCTTATAGCTATATCTATCCTCGGCTAGGCACGGCCATGAAAGCACTAGGCAGAGGAACAATAGAAGACGTGAAGTACATTGGCCGTGCTCCATCAGCCGCTACTGCTACTGGTTTCTATCAAGCTCATGTCAAAGAACAAACTGAGCTTCCATTTCTGGCTGTGATTTTGTTGCAGTTTGGGTTTGCAGGAATGTCCATTATTTGTAAGTGTGCTTTAAACCAAGGAATGAGTCAACATGTCTTGGTCGTTTATCGTAACGCCGTTGCCACCTTTGTGTTTGCTCCTTTCGCCCTTGTACTTGAAAGGAAAATAAGGCCAAAGATGACGTATTCCATCCTTTTGAAGATCTTGTTGCTGGGTTTGTTGGAGCCAGTGATCGATCAGAATTTGTATTACACTGGTATGAAGTATACAACAGCAACTTTCACAGCTGCCATGACCAATGTTCTTCCTGCTTTTGCATTCTTAATGGCTTGGGCTTTGAGGCTTGAGAAGGTTGACATAAGGAGGCTTCACAGCCAGGCAAAGATAATAGGAACTGTAGTGACAGTAGGAGGAGCGATGCTTATGACTTCAATCAGAGGGCCTAATTTGAATCTTCCATGGACAAAGCAAGATCAAAACAATCATAATAACACTTCTAGCGTACCCAACAATCAAGATCCTATCAAAGGTGCTTTAATGATCTCAGCTGGCTGTATTTCCTGGTCTGGTTTTATCATTCTCCAAGCAATTACGCTAAAATCGTACCCGGCAGTGCTTTCATTAACATCCTGGATTTGCTTAATGGGTATGATAGAAGGATCAGTGCTGGCTTTGGCAATCGAATGGAAGAATCCTGCAGCTTGGTCAATACACTTGAACACTACACTTTTAACAGCTCTCTACGGCGGGATAGTATGTTCAGGAATTGCATACTATGTCCAAGGAGTGGTAATGAAGAAAAGAGGACCTGTTTTTGTGACAGCCTTCAGCCCACTTTCCATGGTTATTGTTGCAGTAATGGGCTCTTTCATTTTGTCTGAGATAGTATACTTGGGAAGGGCAATTGGAGCAATTGTGATAGTGTTTGGATTGTATCTCGTTTTGTGGGGAAAGAGCAAGGATCACCTTCCTTCCAACACTGGAAGCGAAAGAGTAAGACCGTCGGATCAAGAAATGGGCGATCCGGATGAATCGGAGAAGGCTTCGAATCAAGAATTTGTAGCCGTTGATGTTGGTAGTGCTGGAAGAGTTTGA 4113 42.38 MLFLPRVLDASITAMKLALLRPFHGVASSACEVQSLPINSLRFCSQNLRLLLSSCEDCKSLLRIHGYLVVSGLEQHQTVAPHLINSYSLFRECDLTRFVFNSGRTPSVCVYNSVIRAYTRLKRYEEALEIYLYMLDISLEPDKYTFTFALKACTATLNVQEGASIRREISGRKLDYDVFIGTGLIDMYSKMGDRRNAMNVFENMPNRDVAAWNAIIGCLSQCCNPGEAMEFFRMMQMERVEPDLVTLSNLVPAVSKLANVDFCRTIHAYVVRRAFCSEFSNGLIDMYSKCGDIKAARLVFNLMPVRNDVSWGTMMAGYVYNGFFLEVLCLFNHMKKNNLRLNKISTINSILAAGEMIDLDTGRKIHDCAKQQGIDKDITIATSVVVMYLKCGEPQKAKTLFEKLEEKDAVAWSAFVSACVQSGYYEEALSLFQDLQNQKLKIDLATLKSILLICAELNLLHIGKAVHCFYIKAFIDSDVSTETAMVSMYVKCRCLSFATNLFNSILCKDVVTWNALIVIRNHPSALQIYQKKLLESGQVTQEDIDRIQNKVNAILNEEFLASKDYVPKRRDWLSAYWSGFKSPEQLSRVRNTGVKPEILKNVGKAITVLPDTFKPHRAVKKVYEQRAQMIESGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVIHDQETGEKYCPLDHVIMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVIWEAQFGDFANGAQVIFDQFVCSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMEPTLRKQIQESNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDCRSNLSEFDDVEGHPGFDKQGTRFKRLIKDQNYHSDREEGIRRLILCSGKIYYELDDERKKVDGKDIAICRVEQLCPFPYDLIQRELNRYPNAEVVWCQEEPMNMGAYSYIYPRLGTAMKALGRGTIEDVKYIGRAPSAATATGFYQAHVKEQTELPFLAVILLQFGFAGMSIICKCALNQGMSQHVLVVYRNAVATFVFAPFALVLERKIRPKMTYSILLKILLLGLLEPVIDQNLYYTGMKYTTATFTAAMTNVLPAFAFLMAWALRLEKVDIRRLHSQAKIIGTVVTVGGAMLMTSIRGPNLNLPWTKQDQNNHNNTSSVPNNQDPIKGALMISAGCISWSGFIILQAITLKSYPAVLSLTSWICLMGMIEGSVLALAIEWKNPAAWSIHLNTTLLTALYGGIVCSGIAYYVQGVVMKKRGPVFVTAFSPLSMVIVAVMGSFILSEIVYLGRAIGAIVIVFGLYLVLWGKSKDHLPSNTGSERVRPSDQEMGDPDESEKASNQEFVAVDVGSAGRV 1370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2240766 2255215 + Bma016575.1 Bma03g00300 78973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00300 1370 Pfam Transketolase, pyrimidine binding domain 635 850 IPR005475 -
Bma03g00300 1370 SMART Transket_pyr_3 636 849 IPR005475 -
Bma03g00300 1370 PANTHER 2-OXOGLUTARATE DEHYDROGENASE 515 1007 IPR011603 GO:0004591|GO:0006099|GO:0030976
Bma03g00300 1370 Gene3D - 867 1012 IPR042179 -
Bma03g00300 1370 MobiDBLite consensus disorder prediction 1340 1356 - -
Bma03g00300 1370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat family 106 153 IPR002885 -
Bma03g00300 1370 MobiDBLite consensus disorder prediction 1329 1370 - -
Bma03g00300 1370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bma03g00300 1370 PANTHER 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE 515 1007 - -
Bma03g00300 1370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1042 1148 - -
Bma03g00300 1370 Pfam 2-oxoglutarate dehydrogenase C-terminal 871 1007 IPR031717 -
Bma03g00300 1370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1240 1326 - -
Bma03g00300 1370 Gene3D Tetratricopeptide repeat domain 71 166 IPR011990 GO:0005515
Bma03g00300 1370 Pfam PPR repeat 309 338 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat 211 238 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat 281 305 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat 382 407 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat 183 208 IPR002885 -
Bma03g00300 1370 Pfam PPR repeat 410 437 IPR002885 -
Bma03g00300 1370 Pfam EamA-like transporter family 1010 1148 IPR000620 GO:0016020|GO:0016021
Bma03g00300 1370 Pfam EamA-like transporter family 1182 1321 IPR000620 GO:0016020|GO:0016021
Bma03g00300 1370 Gene3D Tetratricopeptide repeat domain 277 356 IPR011990 GO:0005515
Bma03g00300 1370 Gene3D Tetratricopeptide repeat domain 357 461 IPR011990 GO:0005515
Bma03g00300 1370 Gene3D Tetratricopeptide repeat domain 167 268 IPR011990 GO:0005515
Bma03g00300 1370 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 619 855 IPR029061 -
Bma03g00300 1370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Bma03g00300 1370 Gene3D - 592 864 - -
Bma03g00300 1370 TIGRFAM PPR: pentatricopeptide repeat domain 110 142 IPR002885 -
Bma03g00300 1370 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Bma03g00300 1370 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Bma03g00300 1370 TIGRFAM PPR: pentatricopeptide repeat domain 211 243 IPR002885 -
Bma03g00300 1370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00300 Bma08g00990 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01889 Bma-Chr1:69604153 Bma03g00300 Bma-Chr3:2240766 2.56E-119 dispersed
Bma03g00300 Bma-Chr3:2240766 Bma04g01450 Bma-Chr4:49702076 4.75E-108 dispersed
Bma08g00990 Bma-Chr8:48988274 Bma03g00300 Bma-Chr3:2240766 0 transposed
Bma03g00300 Bma-Chr3:2240766 Bma08g00989 Bma-Chr8:48983945 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00300 K00164 - sind:105172198 935.25