Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00309 ATGGATCTCGAGGTTGCTGTAAAGGCTGCCGTTGGTGCACCGGAAATTCTCGGAGACTGTACGTTGATTATTCCGTCAGTTCTTTTTCTTGAATATCTGGTGCGTGAAAATTTCTGTTTTTTTTTTTTGGCTTTAGGTCCGTTTAGCCAGAGAGTTCTGTGGACTCTGGAAGAGAAGAAAATTCCCTACAAGAAGCATCTCATCAATTTCTCCGACAAACCCAAGTGGTTTTTGGAAGTAAATCCAGGGGGGAAAGTGCCTGCCCTGAAAATTGATGACAAATGGGTGTCTGATTCAGATATCATCGTCGGTATTCTGGAGGAAAAATTCCCAGACCCTCCTCTCCATTCTCCTCGTGAGTTTGTTTCAGTGGGGTCGAAAATATTTGGAGCTTTTGTGAAATTCTTGAAGAGCAAGGATCCCAATGATGGATCTGAGCAGGCTTTACTTGATGAGATAAAGGCATTGGATGATCATCTCAAAGAACATGGTCCATATGTGGCTGGAGAGAAGATCACAGCCGTTGATTTGAGTTTGGCACCCAAGCTTTATCATCTTGACGTTGCTCTTGACCATTTCAAACAGTGGAAAGTCCCTGAAAACTTCGTTTATTACTACCATTACAAGCAGCTGCTATTTTCTCGAGAATCCTGCAAGAAATGCGAAACAGCAAAGGAAAATGTAATTGCAGGATGGGAGCCAAAGGTCAATGCATGA 717 42.82 MDLEVAVKAAVGAPEILGDCTLIIPSVLFLEYLVRENFCFFFLALGPFSQRVLWTLEEKKIPYKKHLINFSDKPKWFLEVNPGGKVPALKIDDKWVSDSDIIVGILEEKFPDPPLHSPREFVSVGSKIFGAFVKFLKSKDPNDGSEQALLDEIKALDDHLKEHGPYVAGEKITAVDLSLAPKLYHLDVALDHFKQWKVPENFVYYYHYKQLLFSRESCKKCETAKENVIAGWEPKVNA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2312307 2313809 - Bma016586.1 Bma03g00309 78982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00309 238 Pfam Glutathione S-transferase, N-terminal domain 45 114 IPR004045 -
Bma03g00309 238 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 237 IPR044627 GO:0033355|GO:0045174|GO:0098869
Bma03g00309 238 Gene3D - 117 238 - -
Bma03g00309 238 SFLD Glutathione Transferase (cytosolic) 44 195 IPR040079 -
Bma03g00309 238 SUPERFAMILY GST C-terminal domain-like 120 236 IPR036282 -
Bma03g00309 238 CDD GST_N_family 40 103 - -
Bma03g00309 238 Gene3D Glutaredoxin 42 115 - -
Bma03g00309 238 SFLD Main (cytGST) 44 195 - -
Bma03g00309 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 36 114 IPR004045 -
Bma03g00309 238 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 237 - -
Bma03g00309 238 SUPERFAMILY Thioredoxin-like 37 113 IPR036249 -
Bma03g00309 238 Pfam Glutathione S-transferase, C-terminal domain 145 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00309 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - qsu:112035702 327.405
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01148 Bma-Chr1:12456864 Bma03g00309 Bma-Chr3:2312307 2.92E-78 dispersed
Bma03g00309 Bma-Chr3:2312307 Bma08g01128 Bma-Chr8:50173947 2.56E-80 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g01002 . 1 205 Glutathione S-transferase Gene Family AT2G02930 50.2 1.1e-52 203.4
Bma13g00392 . 1 220 Glutathione S-transferase Gene Family AT2G47730 51.1 1.2e-56 216.9
Bma10g01002 . 1 208 Glutathione S-transferase Gene Family AT2G47730 51.9 1.6e-56 216.5
Bma14g01123 . 1 212 Glutathione S-transferase Gene Family AT3G03190 59.4 5.7e-73 270.8
Bma14g01123 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.8 2.0e-73 272.3
Bma01g01846 . 3 216 Glutathione S-transferase Gene Family AT3G09270 55.3 4.0e-69 258.1
Bma01g01843 . 3 189 Glutathione S-transferase Gene Family AT3G09270 57.4 6.4e-59 224.2
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78380 63.7 4.6e-86 314.3
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G78380 65.1 1.8e-82 302.4
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78380 63.6 2.0e-81 298.9
Bma13g00909 . 1 232 Glutathione S-transferase Gene Family AT1G78370 58.6 9.2e-79 290.0
Bma13g00910 . 1 212 Glutathione S-transferase Gene Family AT1G78370 61.3 3.9e-77 284.6
Bma10g00468 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.2 1.9e-76 282.3
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78340 59.0 9.9e-81 296.6
Bma13g00910 . 1 211 Glutathione S-transferase Gene Family AT1G78340 63.0 2.9e-80 295.0
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78340 60.7 4.6e-78 287.7
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78320 51.4 1.0e-57 219.9
Bma13g00910 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 2.3e-57 218.8
Bma13g00909 . 1 237 Glutathione S-transferase Gene Family AT1G17180 60.8 4.6e-86 314.3
Bma10g00468 . 1 217 Glutathione S-transferase Gene Family AT1G17180 63.5 4.3e-84 307.8
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.6 8.2e-83 303.5
Bma13g00909 . 3 235 Glutathione S-transferase Gene Family AT1G17190 54.5 2.4e-74 275.4
Bma13g00910 . 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 3.2e-71 265.0
Bma10g00468 . 3 215 Glutathione S-transferase Gene Family AT1G17190 55.8 4.2e-71 264.6
Bma13g00910 . 3 215 Glutathione S-transferase Gene Family AT3G43800 51.6 2.4e-61 232.3
Bma13g00909 . 4 237 Glutathione S-transferase Gene Family AT1G53680 54.0 1.8e-69 259.2
Bma13g00910 . 4 216 Glutathione S-transferase Gene Family AT1G53680 57.8 6.8e-69 257.3
Bma10g00468 . 4 217 Glutathione S-transferase Gene Family AT1G53680 53.2 3.7e-67 251.5
Bma14g01714 . 53 220 Glutathione S-transferase Gene Family AT2G02390 58.3 6.7e-57 217.2
Bma06g01222 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.3 4.4e-48 188.0
Bma14g01714 . 11 223 Glutathione S-transferase Gene Family AT2G02380 61.0 5.9e-73 270.8
Bma06g01222 . 15 223 Glutathione S-transferase Gene Family AT2G02380 54.1 1.0e-61 233.4
Bma05g00815 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 4.9e-97 350.9
Bma05g00815 . 1 250 Glutathione S-transferase Gene Family AT5G41240 66.8 5.5e-94 342.0
Bma10g00017 . 10 226 Glutathione S-transferase Gene Family AT5G02780 64.8 2.9e-78 288.5
Bma10g00017 . 8 231 Glutathione S-transferase Gene Family AT3G55040 58.2 8.3e-75 277.3
Bma10g00017 . 7 227 Glutathione S-transferase Gene Family AT5G02790 66.2 7.9e-84 307.0
Bma03g00309 . 1 237 Glutathione S-transferase Gene Family AT1G19570 60.5 1.8e-79 292.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G19570 57.9 4.5e-70 261.2
Bma08g01128 . 1 241 Glutathione S-transferase Gene Family AT1G19570 51.7 4.2e-68 254.6
Bma03g00309 . 1 238 Glutathione S-transferase Gene Family AT1G75270 61.5 9.6e-81 296.6
Bma08g01128 . 1 209 Glutathione S-transferase Gene Family AT1G75270 63.8 7.4e-73 270.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G75270 57.4 9.0e-71 263.5
Bma01g01148 . 53 273 Glutathione S-transferase Gene Family AT5G16710 71.9 1.4e-97 352.8
Bma08g01128 . 3 211 Glutathione S-transferase Gene Family AT5G16710 52.6 3.9e-60 228.4
Bma01g02091 . 1 267 Glutathione S-transferase Gene Family AT1G77290 66.8 1.0e-100 363.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00309 Bma_Chr03 FPKM 13.967313 14.30341 10.332411 11.235773 14.202852 12.904537 13.798532 11.577382 9.720673 11.586416