Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00323 ATGTTGGATCTTAACTCTGGTGTTACTGTTTCTCGTAGTGATTCAATGGAGGTCGAAGATTTCCCAGCTAATTCAGTCACTCAAATGGAAGATTCAGGCACTTCAAATTCCTCCATTGTTAACGCAGAAGAAGCTCTAGCTCCAAGTTATAGTGGAAAAGACGAAGATTCTTCAAACAACTCGTCCGGATTCATTTTCGGCATCATGAGAAAACAGATGGAAAGCGATGGAGCCAATTGGGTCGATGATGCAAACCCATCACCTGAACTACTCACCCAGCCTCTTTTTCCGGTCGCCGCAAACGGGAAAGACTGGGATTTGGAGCTTCGGTTGGGATTAGCTGCCTCGGCGACGCCTCAGTGGTTGAACTTGTCGTTTCCCGACTCCGGTGGTGGTCAAACGGAGCTCAAAAGTTTTCAGCAAAAGCAACAGCTAGTGAGGAAAAGCCGGCGAGGTCCGCGATCTCGGAGCTCTCAGTACCGTGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCGCATATCTGGGATTGTGGGAAACAAGTATATTTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCATATGATAGAGCTGCCATTAAATTCCGAGGAATTGATGCTGATATCAACTTCAACATCAGCGATTACGAAGAAGATATAAAACAGACTAAGAACTTGACCAAGGAGGAATTTGTGTACATTCTTCGCCGCCATAGTAGCGGGTTTTCTCGAGGGAGCTCAAAATTTCAAGGTGCTATGTTTCGAAAGTGTGGGCAATGGGAGGCCAAGGTCGGGCCGCTGCTCGGAAAGAAGTAA 825 47.88 MLDLNSGVTVSRSDSMEVEDFPANSVTQMEDSGTSNSSIVNAEEALAPSYSGKDEDSSNNSSGFIFGIMRKQMESDGANWVDDANPSPELLTQPLFPVAANGKDWDLELRLGLAASATPQWLNLSFPDSGGGQTELKSFQQKQQLVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNISDYEEDIKQTKNLTKEEFVYILRRHSSGFSRGSSKFQGAMFRKCGQWEAKVGPLLGKK 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2429169 2430362 + Bma016601.1 Bma03g00323 78996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00323 274 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Bma03g00323 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 274 - -
Bma03g00323 274 MobiDBLite consensus disorder prediction 1 37 - -
Bma03g00323 274 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
Bma03g00323 274 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
Bma03g00323 274 CDD AP2 159 217 IPR001471 GO:0003700|GO:0006355
Bma03g00323 274 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Bma03g00323 274 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 274 - -
Bma03g00323 274 SUPERFAMILY DNA-binding domain 158 217 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00323 Bma08g00963 CCT
Bma03g00323 Bma08g00963 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00323 Bma-Chr3:2429169 Bma06g00380 Bma-Chr6:10500226 1.25E-12 dispersed
Bma03g00323 Bma-Chr3:2429169 Bma07g00126 Bma-Chr7:1983908 4.12E-12 wgd
Bma03g00323 Bma-Chr3:2429169 Bma08g00963 Bma-Chr8:48627500 2.15E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56979 PF00847 AP2 1.70E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00323 K09284 - jre:108997119 308.916